View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_25 (Length: 316)
Name: NF17195_low_25
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 86 - 301
Target Start/End: Complemental strand, 29335529 - 29335313
Alignment:
| Q |
86 |
atcgtaggtgatcttagtattggcaaaagtcaaaaccctataaattaggataataataacaacattaaatgtggttatt-attcccaattccaatttcaa |
184 |
Q |
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| T |
29335529 |
atcgtagatggtcttagtattggcaaaagtcaaaaccctataaattaggataataacaacaacattaaatgtggttattgattcccaattccaatttcaa |
29335430 |
T |
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| Q |
185 |
tgtgcaatgttttctctattttattctattccaatgcatcaactacttccacagcctgtcctttgtagcattaaatttcatgcctacttcatcannnnnn |
284 |
Q |
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| T |
29335429 |
tgtgcaatgttttctctattttattctattccaatgcatcaactacttccacagcctgtcctttgtagcattaaatttcatgcctacttcatcatttttt |
29335330 |
T |
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| Q |
285 |
naatgcaactatttctt |
301 |
Q |
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|||||||||||||||| |
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| T |
29335329 |
taatgcaactatttctt |
29335313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 29338156 - 29338053
Alignment:
| Q |
99 |
ttagtattggcaaaagtcaaaaccctataaattaggataataataacaacattaaatgtggttatt-attcccaattccaatttcaatgtgcaatgtttt |
197 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |||| |||| |||||||||||||||| ||||||||||| |
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| T |
29338156 |
ttagtattggcaaaagtcaaaaccctataatttaggataataacaacaaccgtaaatgtggctattgattctcaattccaatttcaatatgcaatgtttt |
29338057 |
T |
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| Q |
198 |
ctct |
201 |
Q |
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|||| |
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| T |
29338056 |
ctct |
29338053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 29336154 - 29336062
Alignment:
| Q |
3 |
tattcatctctataaacacccaattaattgatgattgagcggtaatgtttatttagcattgtgctgaatagaggaagaaccttatcgtaggtg |
95 |
Q |
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| T |
29336154 |
tattcatctctatagacacccaattaattgatgtcacaacggagatgtttatttagcattgtgctaaatagaggaagaacctcatcgtaggtg |
29336062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 29336783 - 29336720
Alignment:
| Q |
99 |
ttagtattggcaaaagtcaaaaccctataaattaggataataataacaacattaaatgtggttatt |
164 |
Q |
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|||||||||||||||||||||||||||||| || | | ||||||||||||||||||||| |||| |
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| T |
29336783 |
ttagtattggcaaaagtcaaaaccctataatttttggt--taataacaacattaaatgtggctatt |
29336720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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