View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_27 (Length: 294)
Name: NF17195_low_27
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 50264245 - 50264520
Alignment:
| Q |
1 |
accatgaaaatacactaacaaaggtagnnnnnnnngtgaagaatttggaacatagaaacgtgcccaaatgtttgtaacactgtcaatgataatgtccctt |
100 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50264245 |
accatgaaaatacactaacaaaggtagttttttttgtggagaatttggaacatagaaacgtgcccaaatgtttgtaacactgtcaatgataatgtccctt |
50264344 |
T |
|
| Q |
101 |
gaagtcacatttatttttggacatagatcagaagtgacacatggaacaatgttgggtcgttctatatatccatctttgtgtacgttaattagccctttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
50264345 |
gaagtcacatttatttttggacatagatcagaagtgacacatggaacaatgttgggtcgttctatatatccatctttatgtactttaattagccctttaa |
50264444 |
T |
|
| Q |
201 |
tttcctcaacaacacaagaaccttgg---tgttgatggtttttaccatgttgtgggataaggtttaggtttgaggt |
273 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50264445 |
tttcctcaacaacacaagaaccttggtgttgttgatggtttttaccatgttgtgggataaggtttaggtttgaggt |
50264520 |
T |
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