View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_28 (Length: 282)
Name: NF17195_low_28
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_28 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 3248645 - 3248873
Alignment:
| Q |
38 |
tctttgagttgtgtgttgtggtaaaaggtctcttgtcagtactcaactcagcatacatagtagtatatggaacaggcattaggcgtggtctcagttcaca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248645 |
tctttgagttgtgtgttgtggtaaaaggtctcttgtcagtactcaactcagcatacatagtagtatatggaacaggcattaggcgtggtctcagttcaca |
3248744 |
T |
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| Q |
138 |
aggatcgcaagctgaagagatggatgcagaggcaacaatgaggaatgacagcttctaagtttcctctaaatcaacaggcttcgcagtgcttttatgagga |
237 |
Q |
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| T |
3248745 |
aggatcgcaagctgaagagatggatgcagaggcaacactgaggaatgtcagcttcttagtttcccctaaatcaacaggcttcgcagtgcttttatgagga |
3248844 |
T |
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| Q |
238 |
acagggacaacatccttctgagggataat |
266 |
Q |
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||| |||||| |||||||||||||||||| |
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| T |
3248845 |
acatggacaatatccttctgagggataat |
3248873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 36906066 - 36905802
Alignment:
| Q |
2 |
aaatttggacactcttaactgctgcagctgttggtgtctttgagttgtgtgttgtggtaaaaggtctcttgtcagtactcaactcagcatacatagtagt |
101 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
36906066 |
aaatttggacactcttaagtgctgcagctgttggtgtcttagagttgtatgttgtggtaaaaggtctcttatcagtactcaattcagcatacatagtagt |
36905967 |
T |
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| Q |
102 |
atatggaacaggcattaggcgtggtctcagttcacaaggatcgcaagctgaagagatggatgcagaggcaacaatgaggaatgacagcttctaagtttcc |
201 |
Q |
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| T |
36905966 |
atatggaacaagcattaggtgtggtctcagtaaacaaggatcacaagctgaagagatgtatgcaaaggcaacactaaggaatgacgacctctcagtttcc |
36905867 |
T |
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| Q |
202 |
tctaaatcaacaggcttcgcagtgcttttatgaggaacagggacaacatccttctgagggataat |
266 |
Q |
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| T |
36905866 |
cctaaatcaccaggcgtcgcagtgattttatgaggaacagggacaccatccttctgagggataat |
36905802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 28101938 - 28102201
Alignment:
| Q |
2 |
aaatttggacactcttaactgctgcagctgttggtgtctttgagttgtgtgttgtggtaaaaggtctcttgtcagtactcaactcagcatacatagtagt |
101 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
28101938 |
aaatttgaacactcttaactgctgcagctgttggtgtcttagagttgtgtgttgtggtaaaaggtatcttatcagtactcaaatcagcatacatagtagt |
28102037 |
T |
|
| Q |
102 |
atatggaacaggcattaggcgtggtctcagttcacaaggatcgcaagctgaagagatggatgcagaggcaacaatgaggaatgacagcttctaagtttcc |
201 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||||||| | ||| ||||||| |
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| T |
28102038 |
atatggaacatgcattaggcgtggtctcagttcacaaggatcacaagctgaa-agatagatgcagaggcaacactgaggaatgacgacctctcagtttcc |
28102136 |
T |
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| Q |
202 |
tctaaatcaacaggcttcgcagtgcttttatgaggaacagggacaacatccttctgagggataat |
266 |
Q |
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|||||||| |||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
28102137 |
cctaaatcaccaggattcgcaatgcttttatgaggaacaaggacaccatccttctgagggataat |
28102201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 74224 - 74317
Alignment:
| Q |
43 |
gagttgtgtgttgtggtaaaaggtctcttgtcagtactcaactcagcatacatagtagtatatggaacaggcattaggcgtggtctcagttcac |
136 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||| | ||||| || |||||||||||||| |
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| T |
74224 |
gagttgtgtgttgtggtaaaaggcatcttatcagtactgaactcaccatacatagtagtatatggaagatgcattctgcttggtctcagttcac |
74317 |
T |
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