View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_3 (Length: 723)
Name: NF17195_low_3
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 15 - 700
Target Start/End: Original strand, 28036583 - 28037268
Alignment:
| Q |
15 |
atcattgtcacgtgccaatgaaaccaatgaagctgcagcatcagaacgttcatctattgaacaaccagaaagcaaaattgcaacttgttcccaaatgaga |
114 |
Q |
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| T |
28036583 |
atcattgtcacgtgccaatgaaaccaatgaagctgcagcatcagaacgttcatctattgaacaaccagaaagcaaaattgcaacttgttcccaaatgaga |
28036682 |
T |
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| Q |
115 |
catagaattggttcattagctgctataggaggaagaccaagatattcatcatcgcgttcttctgcagaagccgagactcttaacaaccattgaacatctc |
214 |
Q |
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| T |
28036683 |
cagagaattggttcattagctgctataggaggaagaccaagatattcatcatcgcgttcttctgcagaagccgagactcttaacaaccattgaatatctc |
28036782 |
T |
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| Q |
215 |
caagggaattttctaactgcattgaggttttgcgaaaggcggcggtgggaatgatggtgaagagacgttttatgccgtttacacgacatttcatgactaa |
314 |
Q |
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| T |
28036783 |
caagggaattttctaactgcattgaggttttgcgaaaggcggtggtgggaatgatggtgaagagacgttttatgccgtttacacgacatttcatgactaa |
28036882 |
T |
|
| Q |
315 |
tccaagggctttgtcgaggacttgttcagtgtcatcgatgattcgtcttgtgggacgttcatataggtcattgctattccttgcagcttgtcgaagaagg |
414 |
Q |
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| T |
28036883 |
tccaagggctttgtcgaggacttgttctgtgtcatcgatgattcgtcttgtgggacgttcatataggtcattgctattccttgcagcttgtcgaagaagg |
28036982 |
T |
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| Q |
415 |
cctgcgagtttttctgttttggtttttaattctagacattcttgtttgaaattttgtgcctcgtccgctgatttagatacctggtccgccatttgtatcg |
514 |
Q |
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| T |
28036983 |
cctgcgagtttttctgttttggtttttaattctagacattcttgtttgaaattttgtgcctcgtccgctgatttagatacctggtcagccatttgtatcg |
28037082 |
T |
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| Q |
515 |
gccgagccaggatctccttcacgatgctcgacatggtggcggtgatacgttgttattgttgttgttttttgtttatgcaaacttttagtattgagggaag |
614 |
Q |
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| T |
28037083 |
gccgagccaggatctccttcacgatgctcgacatggtggcggtgatacgttgttattgttgttgtcttttgtttatgcaaacttttagtattgagggaag |
28037182 |
T |
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| Q |
615 |
caatgtaatgtgtaaatgttttgttgtatgtggggccaaggaggttctggctgtgggcggtggtgggaatgtgtatgcattctaca |
700 |
Q |
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| T |
28037183 |
caatgtaatgtgtaaatgttttgttgtatgtggggccaaggaggttctggctgtgggcggtggtgggaatgtgtatgcattctaca |
28037268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 8756284 - 8756206
Alignment:
| Q |
296 |
cacgacatttcatgactaatccaagggctttgtcgaggacttgttcagtgtcatcgatgattcgtcttgtgggacgttc |
374 |
Q |
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|||||||||| | ||||||| ||| ||||||||||| |||||||| || || |||||||| ||| |||| |||||||| |
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| T |
8756284 |
cacgacattttaggactaatgaaagtgctttgtcgagtacttgttctgtttcttcgatgatccgttttgttggacgttc |
8756206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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