View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_32 (Length: 241)
Name: NF17195_low_32
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 20829875 - 20829644
Alignment:
| Q |
7 |
atcaatttgtgatagtgttgttccctataaacaacaacattagataacaaaaatgctacttagagcgaaagtgaggtgcattagttttataaataaatcg |
106 |
Q |
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| T |
20829875 |
atcaatttgtgatagtgttgttccctataaacaacaacattagacaacaaaaatgctgcttagagcgaaagtgaggtgcactagtttcataaataaattg |
20829776 |
T |
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| Q |
107 |
tagtattagaaagaggggtaacttgtgagacctctattttaggccaacatttggaggcttaaagcgaga-----tttggactgttttatctttgtgtcga |
201 |
Q |
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| T |
20829775 |
tagtattagacagaggggtaacttgtgagacctctattttaggctaacatttggaggcttaaagcgagatttgatttggaccgttttatctttgtgtcaa |
20829676 |
T |
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| Q |
202 |
caatgaatatcattagactattacttttccca |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20829675 |
caatgaatatcattagactattacttttccca |
20829644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 23348336 - 23348364
Alignment:
| Q |
213 |
attagactattacttttcccaccctatgc |
241 |
Q |
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| T |
23348336 |
attagactattacttttcccaccctatgc |
23348364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 3402905 - 3403118
Alignment:
| Q |
7 |
atcaatttgtgatagtgttgttccctataaacaacaacattagataacaaaaatgctacttagagcgaaagtgaggtgcattagttttataaataaatcg |
106 |
Q |
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||||||| | ||||||||||||| ||||||||| ||| | | ||| || ||||||||||||||||||||| | |||||||||||||| | | |||| | |
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| T |
3402905 |
atcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaatgctacttagagcgaaaaaggggtgcattagttttgaacacaaattg |
3403004 |
T |
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| Q |
107 |
tagtattagaaagaggggtaacttgt---gagacctctattttaggccaacatttggaggcttaaagcgaga-tttggactgttttatctttgtgtcgac |
202 |
Q |
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| T |
3403005 |
ttgcatctgtaggaagggtaacatgtggcgagacctctattttaggccaatatttgaaaacctaaagcgagattttggaccgttttatctttggaccgac |
3403104 |
T |
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| Q |
203 |
aatgaatatcatta |
216 |
Q |
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||||| ||||||| |
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| T |
3403105 |
catgaacatcatta |
3403118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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