View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_35 (Length: 236)
Name: NF17195_low_35
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_35 |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 42637686 - 42637478
Alignment:
| Q |
14 |
tatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgccttcatcttctcgacataaagtgggcggtcatgtgtacatggatggagtgtg |
113 |
Q |
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| T |
42637686 |
tatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgccttcatcttctcgacataaagtgggcggtcatgtgtacatggatggagtgtg |
42637587 |
T |
|
| Q |
114 |
tcattggttgagtaaaacatacaataaaaattatctcgtgtcatttaacttgactactgagatgtttgtgacaacatctatactgacaaacacgaatgat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42637586 |
tcattggttgagtaaaacatacaataaaaattatctcgtgtcatttaacttgactactgaaatgtttgtgacaacatctatactgacaaacacgaatgat |
42637487 |
T |
|
| Q |
214 |
attgtttat |
222 |
Q |
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|||| |||| |
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| T |
42637486 |
attgattat |
42637478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 21699388 - 21699417
Alignment:
| Q |
92 |
atgtgtacatggatggagtgtgtcattggt |
121 |
Q |
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| T |
21699388 |
atgtgtacatggatggagtgtgtcattggt |
21699417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 42629981 - 42629932
Alignment:
| Q |
14 |
tatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgcct |
63 |
Q |
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| T |
42629981 |
tatattgtcttaaaagcaactcttggagaaaacttgatataaatatgcct |
42629932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 14522 - 14493
Alignment:
| Q |
92 |
atgtgtacatggatggagtgtgtcattggt |
121 |
Q |
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| T |
14522 |
atgtgtacatggatggagtgtgtcattggt |
14493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 21378738 - 21378710
Alignment:
| Q |
94 |
gtgtacatggatggagtgtgtcattggtt |
122 |
Q |
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| T |
21378738 |
gtgtacatggatggagtgtgtcattggtt |
21378710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 29123893 - 29123925
Alignment:
| Q |
91 |
catgtgtacatggatggagtgtgtcattggttg |
123 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
29123893 |
catgtctacatggatggagtgtgtcattggttg |
29123925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 29137048 - 29137080
Alignment:
| Q |
91 |
catgtgtacatggatggagtgtgtcattggttg |
123 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
29137048 |
catgtctacatggatggagtgtgtcattggttg |
29137080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 32745166 - 32745134
Alignment:
| Q |
91 |
catgtgtacatggatggagtgtgtcattggttg |
123 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
32745166 |
catgtctacatggatggagtgtgtcattggttg |
32745134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 16920781 - 16920813
Alignment:
| Q |
95 |
tgtacatggatggagtgtgtcattggttgagta |
127 |
Q |
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| T |
16920781 |
tgtacatggatggagtgtgtcattggtggagta |
16920813 |
T |
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