View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_low_36 (Length: 235)

Name: NF17195_low_36
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_low_36
NF17195_low_36
[»] chr5 (3 HSPs)
chr5 (1-88)||(20830829-20830916)
chr5 (1-113)||(20809130-20809234)
chr5 (146-221)||(20809236-20809310)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 20830829 - 20830916
Alignment:
Q  1 ataagatatccaacatattcccccattaaattagatcaaaattagataattatattaaatttcattttgatatttatgcaagtcattt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20830829 ataagatatccaacatattcccccattaaattagatcaaaattaaataattatattaaatttcattttgatatttatgcaagtcattt 20830916  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 20809130 - 20809234
Alignment:
Q  1 ataagatatccaacatattcccccattaaattagatcaaaattagataattatattaaatttcattttgatatttatgcaagtcatttattttcattatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||||    
T  20809130 ataagatatccaacatattcccccattaaattagatcaaaattaaataattatattaaatttcattttga--------caagtcatttattttcattatc 20809221  T
Q  101 ctaattccttacc 113  Q
    |||||||||||||    
T  20809222 ctaattccttacc 20809234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 20809236 - 20809310
Alignment:
Q  146 atgcaaaatgttagccacacattttgtttctcaacagactccatttggtcaacgtgagtcgtcgggacaacattac 221  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20809236 atgcaaaatgttagccacacattt-gtatctcaacagactccagttggtcaacgtgagtcgtcgggacaacattac 20809310  T

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