View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17195_low_4 (Length: 683)

Name: NF17195_low_4
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17195_low_4
NF17195_low_4
[»] chr5 (6 HSPs)
chr5 (64-499)||(2960133-2960575)
chr5 (64-499)||(2968602-2969044)
chr5 (569-663)||(2960033-2960127)
chr5 (569-663)||(2968502-2968596)
chr5 (213-375)||(14602884-14603046)
chr5 (213-285)||(23922598-23922670)
[»] chr7 (6 HSPs)
chr7 (80-380)||(45670434-45670739)
chr7 (180-289)||(7725893-7726006)
chr7 (578-635)||(46491778-46491835)
chr7 (213-285)||(23055415-23055487)
chr7 (213-285)||(32456498-32456569)
chr7 (217-285)||(47923332-47923400)
[»] chr8 (2 HSPs)
chr8 (179-375)||(9416880-9417080)
chr8 (65-144)||(26658444-26658521)
[»] scaffold0158 (1 HSPs)
scaffold0158 (179-289)||(26954-27068)
[»] chr2 (5 HSPs)
chr2 (213-285)||(32617583-32617655)
chr2 (215-285)||(28917211-28917281)
chr2 (213-285)||(31654699-31654771)
chr2 (233-282)||(11547314-11547363)
chr2 (245-281)||(6423827-6423863)
[»] chr4 (4 HSPs)
chr4 (65-395)||(21393737-21394073)
chr4 (216-285)||(31146863-31146932)
chr4 (214-288)||(26442600-26442674)
chr4 (65-143)||(37338756-37338834)
[»] chr1 (3 HSPs)
chr1 (184-288)||(22093682-22093790)
chr1 (214-289)||(52470620-52470695)
chr1 (213-285)||(4422273-4422345)
[»] chr6 (1 HSPs)
chr6 (216-285)||(15968219-15968287)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 64 - 499
Target Start/End: Complemental strand, 2960575 - 2960133
Alignment:
Q  64 aaagaagcaaaaatggtatatatatttacaccgaaagagacgcctctctagcacaagacgtattaaagagggcactcaaaaa------taaagattcagt 157  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||||||||    
T  2960575 aaagaagcaaaaatgatatatatattcataccgaaagagacgcctctctagcacaagacatattaaagagggcactcaaaaacaaagataaagattcagt 2960476  T
Q  158 cgaaacaaatacaaagacaaacagtcagccgatacc-aaacaagctaatgggtccgaccac---tgctgacaaccaaaaacaaaagtagcgttattagcc 253  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  2960475 cgaaacaaatacaaagacaaacagtcagccgatacccaaacaagataaagggtccgaccaccactactgacaaccaaaaacaaaagtagcgttattagcc 2960376  T
Q  254 ttcaatcaccggtatgaatgaaatttaaccttttcaccgagctctacattaggagtgtgagaactataaaaaagcctactattatgctcattccatacaa 353  Q
    ||||| |||  |||| |||||||||||| |||||||||||||||||||||||   |||||||||||| |||||||||||||||| ||||||| ||||| |    
T  2960375 ttcaaccactagtattaatgaaatttaagcttttcaccgagctctacattag---tgtgagaactatcaaaaagcctactattacgctcatttcatacta 2960279  T
Q  354 gccaaacagaaagtaaccaaagtaattgaagaaaagatcgacacgccgttgaggcacctaaacaattagcgaactgaacaaaatgatcacgaatcctgta 453  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2960278 gccaaacagaaagtaacctaagtaattgaagaaaagatcgacacgccgttgaggcacataaacaattagcgaactgaacaaaatgatcacgaatcctgta 2960179  T
Q  454 atgatcgatcgacatatgcataagttgatcatttctttcatttttt 499  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||    
T  2960178 atgatcgattgatatatgcataagtcgatcatttctttcatttttt 2960133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 64 - 499
Target Start/End: Complemental strand, 2969044 - 2968602
Alignment:
Q  64 aaagaagcaaaaatggtatatatatttacaccgaaagagacgcctctctagcacaagacgtattaaagagggcactcaaaaa------taaagattcagt 157  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||||||||    
T  2969044 aaagaagcaaaaatgatatatatattcataccgaaagagacgcctctctagcacaagacatattaaagagggcactcaaaaacaaagataaagattcagt 2968945  T
Q  158 cgaaacaaatacaaagacaaacagtcagccgatacc-aaacaagctaatgggtccgaccac---tgctgacaaccaaaaacaaaagtagcgttattagcc 253  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  2968944 cgaaacaaatacaaagacaaacagtcagccgatacccaaacaagataaagggtccgaccaccactactgacaaccaaaaacaaaagtagcgttattagcc 2968845  T
Q  254 ttcaatcaccggtatgaatgaaatttaaccttttcaccgagctctacattaggagtgtgagaactataaaaaagcctactattatgctcattccatacaa 353  Q
    ||||| |||  |||| |||||||||||| |||||||||||||||||||||||   |||||||||||| |||||||||||||||| ||||||| ||||| |    
T  2968844 ttcaaccactagtattaatgaaatttaagcttttcaccgagctctacattag---tgtgagaactatcaaaaagcctactattacgctcatttcatacta 2968748  T
Q  354 gccaaacagaaagtaaccaaagtaattgaagaaaagatcgacacgccgttgaggcacctaaacaattagcgaactgaacaaaatgatcacgaatcctgta 453  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2968747 gccaaacagaaagtaacctaagtaattgaagaaaagatcgacacgccgttgaggcacataaacaattagcgaactgaacaaaatgatcacgaatcctgta 2968648  T
Q  454 atgatcgatcgacatatgcataagttgatcatttctttcatttttt 499  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||    
T  2968647 atgatcgattgatatatgcataagtcgatcatttctttcatttttt 2968602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 569 - 663
Target Start/End: Complemental strand, 2960127 - 2960033
Alignment:
Q  569 aaacaaagaataaaccacacgaacatcttcatcttcatattcttcatcctcatctttttccttaaattaaatcaatatacacccaagtacacctc 663  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2960127 aaacaaagaataaaccacaggaacatcttcatcttcatattcttcatcctcatctttttccttaaattaaatcaatgtacacccaagtacacctc 2960033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 569 - 663
Target Start/End: Complemental strand, 2968596 - 2968502
Alignment:
Q  569 aaacaaagaataaaccacacgaacatcttcatcttcatattcttcatcctcatctttttccttaaattaaatcaatatacacccaagtacacctc 663  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2968596 aaacaaagaataaaccacaggaacatcttcatcttcatattcttcatcctcatctttttccttaaattaaatcaatgtacacccaagtacacctc 2968502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 14603046 - 14602884
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaaccttttcaccgagctctacattaggagtgtg 312  Q
    ||||||||||| ||| | |||||||||  || |||||||||||||| ||||| ||||||||||| ||||||||||||   ||||| ||||| ||||||||    
T  14603046 accactgctgagaacgataaacaaaagcggcattattagccttcaaccaccgatatgaatgaaacttaaccttttcaataagctccacattgggagtgtg 14602947  T
Q  313 agaactataaaaaagcctactattatgctcattccatacaagccaaacagaaagtaaccaaag 375  Q
      | |||| |||||| ||| ||||| ||||||  || || ||||||||| ||| |||||||||    
T  14602946 taagctattaaaaagtctattattacgctcatcgcacactagccaaacacaaattaaccaaag 14602884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 23922598 - 23922670
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    |||||| | ||||||||  ||||||| | || ||||||||| | || |||||||| |||||||||||||||||    
T  23922598 accactaccgacaaccatgaacaaaaatggcattattagcccttaaccaccggtaggaatgaaatttaacctt 23922670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 80 - 380
Target Start/End: Original strand, 45670434 - 45670739
Alignment:
Q  80 tatatatatttacaccgaaagagacgcctctctagcacaagacgtattaaagagggcactcaa-aaataaagattcagtcgaaacaaatacaaagacaaa 178  Q
    |||||||||| ||||  | |||||||||| ||||||||||| ||||| ||||| | | ||||| ||| | |||| ||||| |||||||||||||||||||    
T  45670434 tatatatattcacactaacagagacgcctttctagcacaaggcgtatcaaagaagacgctcaagaaacagagatccagtcaaaacaaatacaaagacaaa 45670533  T
Q  179 cagtcagccgatacc-aaacaagctaatgggtccgacc---actgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatga 274  Q
    | ||||||||||||| |||||| |||| |||| |||||   ||||||||||||| ||||||||||| || ||||| ||||| || |||||||||||||||    
T  45670534 cggtcagccgatacccaaacaaactaacgggttcgaccgccactgctgacaaccgaaaacaaaagttgcattatttgcctttaaccaccggtatgaatga 45670633  T
Q  275 aatttaaccttttcaccgagctctacattaggagtgtgagaactataaaaaagcctactattatgctcattccatacaagccaaacagaaagtaaccaaa 374  Q
    ||||| |||||||||   ||||| ||||| |||||||||||||||| ||||| |||||||||| |||| |||||||| ||||||||||| ||||||||||    
T  45670634 aatttgaccttttcaataagctccacattgggagtgtgagaactatcaaaaaacctactattacgctcgttccatactagccaaacagagagtaaccaaa 45670733  T
Q  375 gtaatt 380  Q
    ||||||    
T  45670734 gtaatt 45670739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 7725893 - 7726006
Alignment:
Q  180 agtcagccgatacc-aaacaagctaatgggtccgaccac---tgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaa 275  Q
    |||||||||||||| ||||||| ||| ||||||||||||   ||||||||||||||||| |||  ||| |||||||||||||| ||||  ||||||||||    
T  7725893 agtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcagcattattagccttcaaccaccaatatgaatgaa 7725992  T
Q  276 atttaaccttttca 289  Q
    ||||||||||||||    
T  7725993 atttaaccttttca 7726006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 635
Target Start/End: Original strand, 46491778 - 46491835
Alignment:
Q  578 ataaaccacacgaacatcttcatcttcatattcttcatcctcatctttttccttaaat 635  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||| | ||||||||    
T  46491778 ataaaccacatgaacatcttcatcctcatgttcttcatcctcatcttctaccttaaat 46491835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 23055487 - 23055415
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    ||||||||||||| |||||||||||||  || ||||||||| |||| |||| ||| |||||||| ||||||||    
T  23055487 accactgctgacacccaaaaacaaaagaggcattattagccctcaaccaccagtaggaatgaaagttaacctt 23055415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 32456569 - 32456498
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    ||||| ||||||||||||||||||||   || |||||||||||||| |||| |||||||||||| ||||||||    
T  32456569 accaccgctgacaaccaaaaacaaaacg-gcattattagccttcaaccaccagtatgaatgaaacttaacctt 32456498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 47923332 - 47923400
Alignment:
Q  217 ctgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    ||||||||| |||||||||||||  || ||||||||| |||| |||| ||| |||||||||||||||||    
T  47923332 ctgctgacacccaaaaacaaaagaggcattattagccctcaaccacccgtaggaatgaaatttaacctt 47923400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 375
Target Start/End: Original strand, 9416880 - 9417080
Alignment:
Q  179 cagtcagccgatacc-aaacaagctaatgggtccgaccac---tgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatga 274  Q
    ||||||||||||||| ||||||| |||  ||||| ||||    |||||| ||||| |||||||||  || |||||||||||||| |||| ||||||||||    
T  9416880 cagtcagccgatacccaaacaagttaacaggtccaaccataattgctgagaaccataaacaaaagcggcattattagccttcaaccaccagtatgaatga 9416979  T
Q  275 aatttaaccttttcaccgagctctacattaggagtgtgagaactataaaaaagcctactattatgctcattccatacaagccaaacagaaagtaaccaaa 374  Q
    || ||||||||||||   ||||| ||||| |||||||||||||||| ||||||  || ||||| ||| |||  | || ||||| ||| ||||||||||||    
T  9416980 aacttaaccttttcagtaagctccacattgggagtgtgagaactattaaaaagtttattattacgcttattgtacactagccatacacaaagtaaccaaa 9417079  T
Q  375 g 375  Q
    |    
T  9417080 g 9417080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 26658444 - 26658521
Alignment:
Q  65 aagaagcaaaaatggtatatatatttacaccgaaagagacgcctctctagcacaagacgtattaaagagggcactcaaaa 144  Q
    ||||| ||||||||||||||||  | ||||  | | |||| ||||| || |||||||||||||||||||| |||||||||    
T  26658444 aagaaacaaaaatggtatatat--tcacactaacaaagacacctctttaacacaagacgtattaaagaggtcactcaaaa 26658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 26954 - 27068
Alignment:
Q  179 cagtcagccgatacc-aaacaagctaatgggtccgaccac---tgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatga 274  Q
    ||||||||||||||| ||||||| ||| |||| |||||||   | |||| ||||| |||||||||  || |||||||||||||| |||| ||||||||||    
T  26954 cagtcagccgatacccaaacaagttaacgggtacgaccaccactcctgagaaccataaacaaaagcggcattattagccttcaaccaccagtatgaatga 27053  T
Q  275 aatttaaccttttca 289  Q
    || ||||||||||||    
T  27054 aacttaaccttttca 27068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 32617583 - 32617655
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    |||||||||||||||||||||||||||  || |||||||||| ||| |||| ||| |||||||||||||||||    
T  32617583 accactgctgacaaccaaaaacaaaagcggcattattagcctgcaaccaccagtaggaatgaaatttaacctt 32617655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 28917281 - 28917211
Alignment:
Q  215 cactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    |||||| ||||||||||||||||||  || |||||| ||||||| ||||  || |||||||||||||||||    
T  28917281 cactgcggacaaccaaaaacaaaagaggcattattaaccttcaaccaccaataggaatgaaatttaacctt 28917211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 31654699 - 31654771
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    ||||| ||||||||| ||||||||||| ||| | |||||||||||| ||||  ||||||||||| | ||||||    
T  31654699 accaccgctgacaacgaaaaacaaaagcagcatcattagccttcaaccaccattatgaatgaaactcaacctt 31654771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 11547363 - 11547314
Alignment:
Q  233 acaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaac 282  Q
    |||||||| || |||||||||||||| ||||  |||||||||||||||||    
T  11547363 acaaaagtggctttattagccttcaaccaccaatatgaatgaaatttaac 11547314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 6423863 - 6423827
Alignment:
Q  245 ttattagccttcaatcaccggtatgaatgaaatttaa 281  Q
    |||||||||||||| |||| |||||||||||||||||    
T  6423863 ttattagccttcaaccaccagtatgaatgaaatttaa 6423827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 65 - 395
Target Start/End: Complemental strand, 21394073 - 21393737
Alignment:
Q  65 aagaagcaaaaatggtatatatatttacaccgaaagagacgcctctctagcacaagacgtattaaagagggcactcaaaa-ataaagattcagtcgaaac 163  Q
    ||||||||||||||||||||||||| ||||  | ||| |||||||| ||||||||| ||||  ||||||| ||||||||| | | ||  || ||| |||     
T  21394073 aagaagcaaaaatggtatatatattcacacaaacagacacgcctctttagcacaaggcgtaccaaagaggacactcaaaatacagagtgtctgtc-aaat 21393975  T
Q  164 aaatacaaagacaaacagtcagccgata-ccaaacaagctaatgggtc---cgaccactgctgacaaccaaaaacaaaagtagcgttattagccttcaat 259  Q
    || |||||| |||| | || |||||||| |||||||||   | |||||   | |||||||||  | |||| |||||||||| || |||||| || ||||     
T  21393974 aattacaaaaacaagccgttagccgatacccaaacaagaccacgggtctgaccaccactgctaccgaccataaacaaaagtggcattattaaccctcaac 21393875  T
Q  260 c--accggtatgaatgaaatttaaccttttcaccgagctctacattaggagtgtgagaactataaaaaagcctactattatgctcattccatacaagcca 357  Q
    |  ||| ||||||||||||||||||||| ||    ||||||  | | |||||||||||| ||| ||| || ||| ||||| | |||||||| || |||||    
T  21393874 cataccagtatgaatgaaatttaaccttatccataagctctgtaatgggagtgtgagaattattaaatagtctattattacgttcattccacactagcca 21393775  T
Q  358 aacagaaagtaaccaaagtaattgaagaaaagatcgac 395  Q
    |||| |||| | ||| ||||| |  ||||| |||||||    
T  21393774 aacacaaaggagccatagtaactagagaaatgatcgac 21393737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 31146932 - 31146863
Alignment:
Q  216 actgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    ||||||||||||||  ||||||||| || ||||||||| | || |||| |||||||||||||||||||||    
T  31146932 actgctgacaaccatgaacaaaagtggcattattagcccttaaccaccagtatgaatgaaatttaacctt 31146863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 26442674 - 26442600
Alignment:
Q  214 ccactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaaccttttc 288  Q
    |||||||| ||| ||| |||||||||  |||||||| ||||| || ||||  || ||||||||||||||||||||    
T  26442674 ccactgctcacagccataaacaaaagaggcgttatttgcctttaaccaccaataggaatgaaatttaaccttttc 26442600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 37338756 - 37338834
Alignment:
Q  65 aagaagcaaaaatggtatatatatttacaccgaaagagacgcctctctagcacaagacgtattaaagagggcactcaaa 143  Q
    ||||| ||||||||| ||||||||||||||  | |||||| ||||  ||||||||||| || |||||||| | ||||||    
T  37338756 aagaaacaaaaatggaatatatatttacacaaacagagacacctccttagcacaagacatactaaagaggactctcaaa 37338834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 22093790 - 22093682
Alignment:
Q  184 agccgatacc-aaacaagctaatgggtccgacc---actgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaattt 279  Q
    |||||||||| ||||||||||| || |||||||   |||| ||||||||| ||||||||||  | ||||||||| |||| ||||  || |||||||||||    
T  22093790 agccgatacccaaacaagctaagggatccgaccgccactgttgacaaccataaacaaaagtgacattattagccctcaaccaccaataagaatgaaattt 22093691  T
Q  280 aaccttttc 288  Q
     ||||||||    
T  22093690 taccttttc 22093682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 52470695 - 52470620
Alignment:
Q  214 ccactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaaccttttca 289  Q
    |||||||||||||||||||||||| || || ||| ||||| |||| ||||  || ||||| ||||| |||||||||    
T  52470695 ccactgctgacaaccaaaaacaaacgtggcattactagccatcaaccaccaataagaatggaattttaccttttca 52470620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 4422273 - 4422345
Alignment:
Q  213 accactgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    |||||||||||||| |||||| |||||| || |||||| ||  ||| ||||  || |||||||||||||||||    
T  4422273 accactgctgacaatcaaaaataaaagtggcattattaacccgcaaccaccactaggaatgaaatttaacctt 4422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 15968287 - 15968219
Alignment:
Q  216 actgctgacaaccaaaaacaaaagtagcgttattagccttcaatcaccggtatgaatgaaatttaacctt 285  Q
    |||||||||| ||||||| ||||   || ||||||||| |||| |||||||||||||||||| |||||||    
T  15968287 actgctgacacccaaaaataaaaag-gcattattagccctcaaccaccggtatgaatgaaatctaacctt 15968219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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