View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_40 (Length: 216)
Name: NF17195_low_40
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 15179465 - 15179286
Alignment:
| Q |
18 |
caaccattgttgctgttacacttgctccttcgatcaccatttttcttcttcagacactgttcttcctccaatttccttgttctaactctcagtacaataa |
117 |
Q |
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| T |
15179465 |
caaccattgttgctgttacacttgctccttcgatcaccatttttcttcttcagacactgttcttcctccaatttccttgttctaactctcagtacaataa |
15179366 |
T |
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| Q |
118 |
tgtgttttctttatctttgagtttaa------tattgtcctttaattttcattttcctgtgacaaagtgctaggtgttag |
191 |
Q |
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| T |
15179365 |
tgtgttttctttatctttgagtttaataattgtattgtcctttaattttcattttcctttgacaaagtgctaggtgttag |
15179286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 15201114 - 15201072
Alignment:
| Q |
22 |
cattgttgctgttacacttgctccttcgatcaccatttttctt |
64 |
Q |
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| T |
15201114 |
cattgctgctgttacacttgctccttcgctcaccatttttctt |
15201072 |
T |
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