View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17195_low_41 (Length: 211)
Name: NF17195_low_41
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 54160114 - 54160234
Alignment:
| Q |
69 |
tcaaactgccccactaccaaattaagaattcaaactaatccaccatgaaatggaggataataaagtaaacaaaaagtgcagcaaaaaatctgtgaaaaca |
168 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||| || |
|
|
| T |
54160114 |
tcaaactgccccattaccaaagtaagaattcaaactaatccaccatgaaatggtggataataaagtaaacaaaaagtgtagcaaaaaatgtgagaaagca |
54160213 |
T |
|
| Q |
169 |
atctacctttccggggcagta |
189 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
54160214 |
atctacctttctggggcagta |
54160234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 53867198 - 53867106
Alignment:
| Q |
99 |
caaactaatccaccatgaaatggaggataataaagtaaacaaaaagtgcagcaaaaaatctgtgaaaacaatctacctttccggggcagtagaa |
192 |
Q |
| |
|
|||| ||||| | ||||||||||| ||||||||||| || || |||| |||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
53867198 |
caaattaatcaagcatgaaatggatgataataaagtgaa-aataagtatagcaaaaaatgtgagaaagcaatctacctttccggggcagtagaa |
53867106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 54159917 - 54159982
Alignment:
| Q |
1 |
tgaaattaaaaatcataaaatattaatatgtctaaggtcctcacagacatccagattcaggaaagg |
66 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| |||||||| |||||| |||||||||||||| |
|
|
| T |
54159917 |
tgaaattaaaaatcataaaatatcaatatggctagagtcctcactgacatcaagattcaggaaagg |
54159982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University