View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17195_low_7 (Length: 550)
Name: NF17195_low_7
Description: NF17195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17195_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 30405688 - 30405425
Alignment:
| Q |
16 |
ataaagaaaggattgtccctcatttgtccaaccattgattaaaggaagagatatggatttagtgatccacctccttcttcaccaaacatttgcaatttga |
115 |
Q |
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| T |
30405688 |
ataaagaaaggattgtccctcatttgtccaaccattgattaaaggaagagatatggatttagtgatccacctccttcttcaccaaacatttgcaatttga |
30405589 |
T |
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| Q |
116 |
taggctcggataatgtgaaaagtgaaaacctaaaaaatgttaggtttacaagtggagtcgttacctc--aaacaaatttgatattaggtttaatattaaa |
213 |
Q |
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| T |
30405588 |
taggctcggataatgtgaaaagtgaaaacctaaaaaatgttaggtttacaagtggagtc-ttacctcataaacaaatttgatattaggtttaatattaaa |
30405490 |
T |
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| Q |
214 |
atttaagatgatattagagttccatccaaaatttatttcgatcatcaactattaggtttttgcta |
278 |
Q |
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| T |
30405489 |
atttaagatgatatcagagtctcatccaaaatttatttcgatcatcaactattagatttttgcta |
30405425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 342 - 535
Target Start/End: Complemental strand, 30405421 - 30405228
Alignment:
| Q |
342 |
atagacatacacatcgatgattcaaagataactataatatacatgtttataagtggaacaattattatttcataaattaattttatggaattatgttatg |
441 |
Q |
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| T |
30405421 |
atagacatacatgttgatgattcaaagataaccaaaatgtacatgtttataagtggaacaattattatttcataaattaattttgtgggactgtgttatg |
30405322 |
T |
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| Q |
442 |
ttcaactataaatttcatgaaagagatatattagaaaatgtatcaaccatgaaagcaaaattggtaggagtttacacacacaagaataatgagt |
535 |
Q |
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| T |
30405321 |
ttgaactataaattccatgaaagagatatattagaaaatgtatcaaccatgaaagcaaaattggtaggagtttacacacaaaagaataatgagt |
30405228 |
T |
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