View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17196_high_14 (Length: 377)

Name: NF17196_high_14
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17196_high_14
NF17196_high_14
[»] chr3 (4 HSPs)
chr3 (14-186)||(43815343-43815515)
chr3 (299-359)||(43815160-43815220)
chr3 (197-243)||(43815277-43815323)
chr3 (84-179)||(34760793-34760888)
[»] chr8 (11 HSPs)
chr8 (71-183)||(29253720-29253832)
chr8 (69-180)||(29317290-29317401)
chr8 (69-181)||(29363645-29363757)
chr8 (80-182)||(29310822-29310924)
chr8 (69-181)||(29285469-29285581)
chr8 (69-180)||(29340255-29340366)
chr8 (75-181)||(29357092-29357198)
chr8 (88-183)||(29215276-29215371)
chr8 (80-180)||(29245417-29245517)
chr8 (71-183)||(29223509-29223621)
chr8 (299-359)||(29245622-29245682)
[»] chr2 (3 HSPs)
chr2 (69-181)||(30931326-30931438)
chr2 (87-183)||(30919834-30919930)
chr2 (87-183)||(30910385-30910481)
[»] chr4 (1 HSPs)
chr4 (84-179)||(43729765-43729860)
[»] chr5 (1 HSPs)
chr5 (88-179)||(14497823-14497914)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 43815515 - 43815343
Alignment:
Q  14 agagacaattctctagtatttaaacacactcttaaatcttggagtctaacttatatgtttgtgtttatttttgcagagtcctgacggtgatatcatagat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43815515 agagacaattctctagtatttaaacacactcttaaatcttggagtctaacttatatgtttgtgtttatttttgcagagtcctgacggtgatatcatagat 43815416  T
Q  114 tgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggtattttata 186  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43815415 tgtgttttaacgcataaacaaccagcttttgatcatcctttattgaaagggcaaaaaccattggtattttata 43815343  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 43815220 - 43815160
Alignment:
Q  299 caggatcctccggaaagaccaagatggcacaaccaaatagataatttaagtgacatctttc 359  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43815220 caggatcctccggaaagactaagatggcacaaccaaatagataatttaagtgacatctttc 43815160  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 43815323 - 43815277
Alignment:
Q  197 gtgtgaatttaataagaaaatttcggaaataatttttgaaagcaaac 243  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  43815323 gtgtgaatttaataagaaaaattcggaaataatttttgaaagcaaac 43815277  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 34760888 - 34760793
Alignment:
Q  84 ttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggta 179  Q
    ||||||||||| || |||||| | ||||||||| ||||| | ||| | |||||||||||||||||||||    | |||||||| ||||||||||||    
T  34760888 ttgcagagtccagatggtgatttgatagattgtattttatctcatcatcaaccagcttttgatcatcctaagcttaaagggcataaaccattggta 34760793  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 29253720 - 29253832
Alignment:
Q  71 tttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaa 170  Q
    |||||||| ||||||||||||| || | | ||||||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||| ||||||    
T  29253720 tttgtgttcatttttgcagagttctcatgatgatatcatagattgtgttatgtctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaa 29253819  T
Q  171 ccattggtatttt 183  Q
    |||||||||||||    
T  29253820 ccattggtatttt 29253832  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 29317290 - 29317401
Alignment:
Q  69 tgtttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaa 168  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||| |||| || |||||||||| |||||||||||||||  |||||||||| ||||    
T  29317290 tgtttgtgttcatttttacagagtcctgatggtgatatcatagattgtattttgacacataaacaactagcttttgatcatcccttattgaaaggacaaa 29317389  T
Q  169 aaccattggtat 180  Q
    ||||||||||||    
T  29317390 aaccattggtat 29317401  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 29363645 - 29363757
Alignment:
Q  69 tgtttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaa 168  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||||| | ||||| ||||||||   ||||||||||||||||||||||||||| ||||    
T  29363645 tgtttgtgttcatttgtacagagtcctgatggtgatatcatagattgtatattaactcataaacagttagcttttgatcatcctctattgaaaggacaaa 29363744  T
Q  169 aaccattggtatt 181  Q
    |||||||||||||    
T  29363745 aaccattggtatt 29363757  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 29310822 - 29310924
Alignment:
Q  80 atttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggta 179  Q
    |||||||||||||||||| || |||||| | || |||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29310822 atttttgcagagtcctgatggcgatatcgttgactgtgttttgacacataaacaaccagcttttgatcatcctttattgaaaggacaaaaaccattggta 29310921  T
Q  180 ttt 182  Q
    |||    
T  29310922 ttt 29310924  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 29285469 - 29285581
Alignment:
Q  69 tgtttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaa 168  Q
    ||||||||| |||||||||||||| | ||||||||||  || |||||  |||| || || |||||||||||||||||||||| | |||||||||||||||    
T  29285469 tgtttgtgtatatttttgcagagttccgacggtgatactattgattgcattttgactcacaaacaaccagcttttgatcatcatttattgaaagggcaaa 29285568  T
Q  169 aaccattggtatt 181  Q
    |||||||||||||    
T  29285569 aaccattggtatt 29285581  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 29340255 - 29340366
Alignment:
Q  69 tgtttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaa 168  Q
    ||||||| || | |||| ||||||||||| |||||||| ||||| ||| |||| || |||||||||| |||||||||||||||  |||||||||||||||    
T  29340255 tgtttgttttcaattttacagagtcctgatggtgatataatagactgtattttgactcataaacaactagcttttgatcatcccttattgaaagggcaaa 29340354  T
Q  169 aaccattggtat 180  Q
    ||||||||||||    
T  29340355 aaccattggtat 29340366  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 29357092 - 29357198
Alignment:
Q  75 tgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccat 174  Q
    |||| ||||||||||||||| || |||||||||||||| |||||||| || ||||||||||| ||||| ||||||||| ||||||||||   ||||||||    
T  29357092 tgttcatttttgcagagtcccgatggtgatatcatagactgtgttttgactcataaacaaccggctttcgatcatcctttattgaaaggaacaaaaccat 29357191  T
Q  175 tggtatt 181  Q
    |||||||    
T  29357192 tggtatt 29357198  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 29215371 - 29215276
Alignment:
Q  88 agagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggtatttt 183  Q
    |||||||||| ||||||||||||||||||||| || | ||||||||||| |||||||||||||||   |||| ||| |||||||||||||||||||    
T  29215371 agagtcctgatggtgatatcatagattgtgttgtatctcataaacaaccggcttttgatcatcctacgttgagaggacaaaaaccattggtatttt 29215276  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 29245417 - 29245517
Alignment:
Q  80 atttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggta 179  Q
    ||||||||||| | | || |||||||| || |||||  |||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29245417 atttttgcagatttccgatggtgatattatcgattgcattttgactcataaacaaccagcttttgatcatcctttattgaaaggacaaaaaccattggta 29245516  T
Q  180 t 180  Q
    |    
T  29245517 t 29245517  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 29223509 - 29223621
Alignment:
Q  71 tttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaa 170  Q
    |||||||| ||||||||||||||| || || ||||| |||||||||||| |     ||||||||| |||||| |||||| ||||||||||||  ||||||    
T  29223509 tttgtgttcatttttgcagagtcccgatggcgatataatagattgtgttgtgtttgataaacaactagctttcgatcattctctattgaaagaacaaaaa 29223608  T
Q  171 ccattggtatttt 183  Q
     ||||||||||||    
T  29223609 tcattggtatttt 29223621  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 29245622 - 29245682
Alignment:
Q  299 caggatcctccggaaagaccaagatggcacaaccaaatagataatttaagtgacatctttc 359  Q
    ||||||||||| |||||| ||| | |||| |||||||||  |||||| |||||||||||||    
T  29245622 caggatcctccagaaagatcaaaagggcataaccaaataagtaatttgagtgacatctttc 29245682  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 30931438 - 30931326
Alignment:
Q  69 tgtttgtgtttatttttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaa 168  Q
    ||||| |||| |||||| |||||| | || || ||||| |||||||| ||| |  | |||||||||||||||||||||||||||||||||||||| ||||    
T  30931438 tgtttatgttcatttttacagagttcggatggcgatattatagattgcgttgtgtctcataaacaaccagcttttgatcatcctctattgaaaggacaaa 30931339  T
Q  169 aaccattggtatt 181  Q
    |||||||||||||    
T  30931338 aaccattggtatt 30931326  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 30919930 - 30919834
Alignment:
Q  87 cagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggtatttt 183  Q
    |||||||| ||||| ||||| ||||| |||||| |  | || |||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||    
T  30919930 cagagtccggacggcgatattatagactgtgttgtgtctcacaaacaaccagcttttgatcatcctttattaaaaggacaaaaaccactggtatttt 30919834  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 30910481 - 30910385
Alignment:
Q  87 cagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggtatttt 183  Q
    |||||||| || || ||||| ||||| |||||| |  | || |||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||    
T  30910481 cagagtccagatggcgatattatagactgtgttctgtctcacaaacaaccagcttttgatcatcttctgttgaaaggacaaaaactattggtatttt 30910385  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 43729860 - 43729765
Alignment:
Q  84 ttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggta 179  Q
    ||||||||||| || || ||| | ||||||||| || || | ||| |||||||||||||||| ||||| ||| | ||||| |||||||||||||||    
T  43729860 ttgcagagtccagatggagatttgatagattgtattatatctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta 43729765  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 14497914 - 14497823
Alignment:
Q  88 agagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctctattgaaagggcaaaaaccattggta 179  Q
    ||||||||||||||||||| ||||| || |||    | ||| ||||||||||||||||||||||| | || ||||| |||| |||| |||||    
T  14497914 agagtcctgacggtgatattatagaatgcgttgcgtctcatcaacaaccagcttttgatcatcctatgttaaaaggacaaagaccactggta 14497823  T

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