View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_high_15 (Length: 373)
Name: NF17196_high_15
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_high_15 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 28773410 - 28773054
Alignment:
| Q |
16 |
atccccactataacggaatattctccctgtgtccagatttatgaaacactgcaatcataaattcaaattcagcattaaaaaatttatataacattcttac |
115 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28773410 |
atccccactataacggaatattcttcctgtgtccaaatttatgaaacactgcaatcataaattcaaattcaacattaaaaaatttatataacattcttac |
28773311 |
T |
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| Q |
116 |
aattttaatagctgaaccagatataccatcaaacacataatcatgatcacttgttagcaaactgcaaaatataatgttttctttctttaagcaacatatc |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
28773310 |
aattttaatagctaaaccagatataccatcaaacacataatcttgatcacttgttagcaaactgcaaaataaaatgctttctttc-ttaagcaacatatc |
28773212 |
T |
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| Q |
216 |
cacaattatattcttaattacgttacaaacatattaaagaatcaacataattgattgatagatctgagcattgattcagtnnnnnnnttggatttgagct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28773211 |
cacaattatattcttaattacgttacaaacatattaaagaatcaacataattgattgatagatctgagcattgattcagtaaaaaaattggatttgagct |
28773112 |
T |
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| Q |
316 |
ttgaattcaaacataatgaaatttctattccatgtatataccaaaaattaattgattt |
373 |
Q |
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| T |
28773111 |
ttgaattcaaacataatgaaatttctattccatgtatataacaaaaattaattgattt |
28773054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 28787293 - 28787121
Alignment:
| Q |
16 |
atccccactataacggaatattctccctgtgtccagatttatgaaacactgcaatcataaattcaaattcagcattaaaaaatttatataacattcttac |
115 |
Q |
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| T |
28787293 |
atccccactataacggaatattcttcctgtgtccagatttatgaaacactgcaatcataaattcaaattcagcattaaaaaatttatataacattcatac |
28787194 |
T |
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| Q |
116 |
aattttaatagctgaaccagatataccatcaaacacataatcatgatcacttgttagcaaactgcaaaatata |
188 |
Q |
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| T |
28787193 |
aattttaacagccaaaccagataaaccatcaaacacataatcatgatcacctgttaacaaactgcaaaatata |
28787121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 225 - 373
Target Start/End: Complemental strand, 28787114 - 28786966
Alignment:
| Q |
225 |
attcttaattacgttacaaacatattaaagaatcaacataattgattgatagatctgagcattgattcagtnnnnnnnttggatttgagctttgaattca |
324 |
Q |
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|||||||||||| |||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
28787114 |
attcttaattactttactatcatatcaaagaattaacataattgattgatagatctgagcattgattcagtaaaaaaaatggatatgagctttgaattca |
28787015 |
T |
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| Q |
325 |
aacataatgaaatttctattccatgtatataccaaaaattaattgattt |
373 |
Q |
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|||| ||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
28787014 |
aacagaatgaaatttctattccatatacataacaaaaattaattgattt |
28786966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 8828142 - 8828234
Alignment:
| Q |
69 |
atcataaattcaaattcagcattaaaaaatttatataacattcttacaattttaatagctgaaccagatataccatcaaacacataatcatga |
161 |
Q |
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||||||| |||||||||| |||||||| ||| ||| | || ||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8828142 |
atcataatttcaaattcattgttaaaaaaaatatgtaagaatcaaacatttttaatagccaaaccagatataccatcaaacacataatcatga |
8828234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 28822864 - 28822912
Alignment:
| Q |
241 |
caaacatattaaagaatcaacataattgattgatagatctgagcattga |
289 |
Q |
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| T |
28822864 |
caaacatatcaaagaatcaacataattgatggacagattcgagcattga |
28822912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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