View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_high_16 (Length: 364)
Name: NF17196_high_16
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_high_16 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 42146581 - 42146944
Alignment:
| Q |
1 |
caccaatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgc |
100 |
Q |
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| T |
42146581 |
caccaatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgc |
42146680 |
T |
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| Q |
101 |
tatccaacaagagttttttgtcatgaaaaccaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacaccttt |
200 |
Q |
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| T |
42146681 |
tatccaacaagagttttttgtcatgaaaaccaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacaccttt |
42146780 |
T |
|
| Q |
201 |
tctcattctctcaaaagtaggcagccgctcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcgctccgctcgaacacgtcc |
300 |
Q |
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| T |
42146781 |
tctcattctctcaaaagtaggcagccgctcaatggctacccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcactccgctcgaacacgtcc |
42146880 |
T |
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| Q |
301 |
ggagcagctgctgtcactggccacatctcccggaaactccgacgactgcttgttgatattgtca |
364 |
Q |
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| T |
42146881 |
ggagcagctgctgtcactggccacatctcccggaaactccgacgactgcttgttgatattgtca |
42146944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 299
Target Start/End: Original strand, 42179878 - 42180148
Alignment:
| Q |
29 |
caaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatccaacaagagttttttgtcatgaaa |
128 |
Q |
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| T |
42179878 |
caaacctgtcttgtctgtctctaagttttcttagaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaagagttttttgtcatgtaa |
42179977 |
T |
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| Q |
129 |
accaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacaccttttctcattctctcaaaagtaggcagccgc |
228 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
42179978 |
accaagtttcgcaacatcaacttcatcatgcccaacttttccattttcatcaacgtgtttcattacaccttttctcattctctctaaagtaggcaaccgc |
42180077 |
T |
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| Q |
229 |
tcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcgctccgctcgaacacgtc |
299 |
Q |
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| T |
42180078 |
tcaatggctgcccaggtgaggtgatactcgtcatcctcctgtgtgtgtcgatcactccgctcgaacacgtc |
42180148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 42158880 - 42159174
Alignment:
| Q |
5 |
aatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatc |
104 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
42158880 |
aatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatc |
42158979 |
T |
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| Q |
105 |
caacaagagttttttgtcatgaaaaccaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacaccttttctc |
204 |
Q |
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| T |
42158980 |
caacaagatcttcttatcatgtaaaccaagtttagcaacatcaacttcatcatgcacaacttttccattttcaccaacatgcttcactacaccttttctc |
42159079 |
T |
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| Q |
205 |
attctctcaaaagtaggcagccgctcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgtcgatcgctccgctcgaacacgtc |
299 |
Q |
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| T |
42159080 |
atacgctcaaaagtaggcaaccgctcaatggctgcccaagtgaggtgatactcatcatcctcttgtgtgtgccgatcacttcgctcaaacacgtc |
42159174 |
T |
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