View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17196_high_2 (Length: 978)

Name: NF17196_high_2
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17196_high_2
NF17196_high_2
[»] chr3 (1 HSPs)
chr3 (18-967)||(52240550-52241499)


Alignment Details
Target: chr3 (Bit Score: 926; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 926; E-Value: 0
Query Start/End: Original strand, 18 - 967
Target Start/End: Original strand, 52240550 - 52241499
Alignment:
Q  18 atcacagtgtggcaaacctcgcacacaaagatagaaagaagaatgccaaagatagctttaccttgtttcttactatttttaccgaacagagaatgtaatg 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52240550 atcacagtgtggcaaacctcacacacaaagatagaaagaagaatgccaaagatagctttaccttgtttcttactatttttaccgaacagagaatgtaatg 52240649  T
Q  118 atttgggctcatgtttgtgagtttcacttgctgcttcagtttttccatcaaagactgtctcatttgtagaatgagtacttgattctgctttagcatcata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52240650 atttgggctcatgtttgtgagtttcacttgctgcttcagtttttccatcaaagactgtctcatttgtggaatgagtacttgattctgctttagcatcata 52240749  T
Q  218 tgtaataggactactaagaacatctttaataagagtttgacggctactcgatgaatctggttgagctttggcggaaatgatatggtctacactctggtgt 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52240750 tgtaataggactaccaagaacatctttaataagagtttgacggctgctcgatgaatctggttgagctttggcggaaatgatatggtctacactctggtgt 52240849  T
Q  318 gaatctaccttgtttttactgattgtggaagtatttgacacttcttggtttttattactctttaaagaagaaccattgtatgttataggactatcatttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52240850 gaatctaccttgtttttactgattgtggaagtatttgacacttcttgttttttattactctttaaagaagaaccattgtatgttataggactatcatttt 52240949  T
Q  418 gtgtggtaatctcactgacgatccattcgttaggactatcattttgagtggtaatgtcagtgacgatccattccttagcgctcgagcatttctcaagttt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52240950 gtgtggtaatctcactgacgatccattcgttaggactatcattttgagtggtaatgtcagtgacgatccattccttagcgctcgagcatttctcaagttt 52241049  T
Q  518 aatcttatcttttgtccttgaggttctttctgtcctaaaaggcatcgccaaaggtaccacacctttacttgcccatttatatattgagaaatggaactta 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52241050 aatcttatcttttgtccttgaggttctttctgtcctaaaaggcatcgccaaaggtaccacacctttacttgcccatttatatattgagaaatggaactta 52241149  T
Q  618 tcattactggtattattaggagaaacttcagtaatagatctgtcttttttcaaattgtttcctttgtctacttcatcagattggctcaagtttgaaaact 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52241150 tcattactggtattattaggagaaacttcagtaatagatctgtcttttttcaaattgtttcctttgtctacttcatcagattggctcaagtttgaaaact 52241249  T
Q  718 cctttgataatagactttgcatgtaagttggcttaaaatcattttgcaactctttatgttgggctgaaaatctagatagatgagagtctgagaagtctaa 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52241250 cctttgataatagactttgcatgtaagttggcttaaaatcattttgcaactctttatgttgggctgaaaatctagatagatgagagtctgagaagtctaa 52241349  T
Q  818 tccatttgaagcagcaatgccgttgttaagtggattcgtaatcctaggaggggaaccaaatgtctgaaggtccgctccttttgccaatatggcaggaagg 917  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52241350 tccatttgaagcagcaatgccgttgttaagtggattcgtaatcctaggaggggaaccaaatgtctgaaggtccgctccttttgccaatatggcaggaagg 52241449  T
Q  918 ctgatcagtcgaatttggaaggagtaaacatcagaagcgagttgatgatg 967  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52241450 ctgatcagtcgaatttggaaggagtaaacatcagaagcgagttgaagatg 52241499  T

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