View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_high_3 (Length: 659)
Name: NF17196_high_3
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_high_3 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 333052 - 333413
Alignment:
| Q |
18 |
actctttatattctatattcacttaataaaggaaaaagtttaaaagtannnnnnnnnnn-----aaagaagtttaaaagtattttaatagtcatttgtaa |
112 |
Q |
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| T |
333052 |
actctttatattctatattcacttaataaaggaaaaagtttaaaagtattttttattttttttgaaagaagtttaaaagtatttaaatagtcatttttaa |
333151 |
T |
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| Q |
113 |
actcaaaaaataattcaataaacaacataccaattttcatatttccaatatattagaaaaacattataatcaaactcgtgca-----accatcgggttat |
207 |
Q |
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| T |
333152 |
aataaaaaaataattcaataaacaacataccaattttcatatttccaatacattagaaaaacattataatcaaactcgtgcaatgcaaccatcgggttat |
333251 |
T |
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| Q |
208 |
atacctagtaatacgcataaaagcttatagtgttaataatagaggtgagaagagagcagtgacaatttcataacgatcccttcgttcccgccttgggtgc |
307 |
Q |
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| T |
333252 |
atacctagtaatacgcataaaagcttatagtgttaataatagagaggagaagagagcagtgacaatttcataacgatcccttcgttcccgccttgggtgc |
333351 |
T |
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| Q |
308 |
cacttgtttgttatatattgattgtaataatagtaactcaaaaaacatgcatatatgctaca |
369 |
Q |
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| T |
333352 |
cacttgtttgttatatattgattgtaataataataactcaaaaaacatgcatatatgctaca |
333413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 449 - 646
Target Start/End: Original strand, 333493 - 333690
Alignment:
| Q |
449 |
gttccttatcgatcgatcaattcctgtgttcgagtaaacatgacggacactactgatgacattgccgaggaaatgtccttccaaggcttcgacgatgact |
548 |
Q |
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| T |
333493 |
gttccttatcgatcgatcaatttctgtgttcgagtaaacatgacggacactactgatgacattgccgaggaaatgtccttccaaggcttcgacgatgact |
333592 |
T |
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| Q |
549 |
gtaagttgcttggaaatcttctcaaagatgttttacaaagggaagttggcatcgactttgttgaaaaacttgcaaaaattcgaatccttgcacaggtt |
646 |
Q |
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| T |
333593 |
gtaagttgcttggaaatcttctcaaagatgttttacaaagggaagttggcatcgactttgttgaaaaacttgcaaaaattcgaatccttgcacaggtt |
333690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 18744262 - 18744327
Alignment:
| Q |
152 |
tatttccaatatattaga-aaaacattataatcaaactcgtgcaaccatcgggttatatacctagt |
216 |
Q |
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| T |
18744262 |
tatttccaataaattaaagaaaacattataatcaaacccgtgcaacgaacggtttatatacctagt |
18744327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 50513115 - 50513068
Alignment:
| Q |
169 |
aaaaacattataatcaaactcgtgcaaccatcgggttatatacctagt |
216 |
Q |
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| T |
50513115 |
aaaaacattataatcaaacttgtgcaacgcacgggttatatacctagt |
50513068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 38923102 - 38923052
Alignment:
| Q |
169 |
aaaaacattataatcaaactcgtgcaaccatcgggttatatacctagtaat |
219 |
Q |
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| T |
38923102 |
aaaaacattataatcaaatccgtgcaacacacgggttatatacctagtaat |
38923052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 39060560 - 39060511
Alignment:
| Q |
169 |
aaaaacattataatcaaactcgtgcaaccatcgggttatatacctagtaa |
218 |
Q |
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| T |
39060560 |
aaaaacattataatcaagcccgtgcaacgcacgggttatatacctagtaa |
39060511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 573
Target Start/End: Original strand, 42168930 - 42169015
Alignment:
| Q |
488 |
atgacggacactactgatgacattgccgaggaaatgtccttccaaggcttcgacgatgactgtaagttgcttggaaatcttctcaa |
573 |
Q |
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| T |
42168930 |
atgacagacactacagatgatattgctgaagaaatctcgttccagagctttgatgatgattgtaggttgcttggtaatcttctcaa |
42169015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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