View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_high_48 (Length: 201)
Name: NF17196_high_48
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 43817086 - 43816920
Alignment:
| Q |
20 |
ctataggaattggtttggaagaagaacaagaggaatctaatatggtcaagttcaaaaagatgatgaaactcattgctgaaaaagcatgggaaatgggtcg |
119 |
Q |
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| T |
43817086 |
ctataggaattggtttggaagaagaacaagaggaatctaatatggtcaagttcaaaaagatgatgaaactcattgctgaaaaagcatgggaaatgggtcg |
43816987 |
T |
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| Q |
120 |
ttctgatccaagaaagatcatttttgctgctaaaatgggtcttgctttgactattatctcccctttg |
186 |
Q |
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| T |
43816986 |
ttctgatccaagaaagatcatttttgctgctaaaatgggtcttgctttgactattatctcccttttg |
43816920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 43825021 - 43824856
Alignment:
| Q |
21 |
tataggaattggtttggaagaagaacaagaggaatctaatatggtcaagttcaaaaagatgatgaaactcattgctgaaaaagcatgggaaatgggtcgt |
120 |
Q |
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| T |
43825021 |
tataggaaatggtttgctacaagaacaagaggaatctaatatggtcaaattcaaagagatgatgaaactcgttgctgaaaaagcatgggaaatgggtcgt |
43824922 |
T |
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| Q |
121 |
tctgatccaagaaagatcatttttgctgctaaaatgggtcttgctttgactattatctcccctttg |
186 |
Q |
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| T |
43824921 |
tctgatccaaggaagatcattttcgctgctaaaatgggtcttgctttggcccttatctcccttttg |
43824856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 43831900 - 43831824
Alignment:
| Q |
110 |
aaatgggtcgttctgatccaagaaagatcatttttgctgctaaaatgggtcttgctttgactattatctcccctttg |
186 |
Q |
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| T |
43831900 |
aaatgggtcggtctgatccaaggaagattatatttgccgcaaaaatgggtcttgctttgactattatctcccttttg |
43831824 |
T |
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