View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17196_high_7 (Length: 434)

Name: NF17196_high_7
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17196_high_7
NF17196_high_7
[»] chr6 (13 HSPs)
chr6 (8-419)||(11002380-11002791)
chr6 (11-415)||(10968204-10968608)
chr6 (11-413)||(10982156-10982558)
chr6 (8-352)||(11018828-11019172)
chr6 (9-365)||(11079575-11079931)
chr6 (8-67)||(11050229-11050288)
chr6 (293-356)||(18300125-18300188)
chr6 (44-82)||(4256408-4256446)
chr6 (44-78)||(4490156-4490190)
chr6 (44-78)||(4493252-4493286)
chr6 (44-78)||(4557422-4557456)
chr6 (44-78)||(4592528-4592562)
chr6 (45-82)||(4516619-4516656)
[»] chr7 (1 HSPs)
chr7 (44-78)||(3086717-3086751)
[»] scaffold0475 (1 HSPs)
scaffold0475 (44-80)||(3483-3519)
[»] chr2 (1 HSPs)
chr2 (35-79)||(24462263-24462307)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 11002791 - 11002380
Alignment:
Q  8 aatcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgt 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002791 aatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgt 11002692  T
Q  108 ggtgcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgc 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002691 ggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgc 11002592  T
Q  208 tccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002591 tccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaa 11002492  T
Q  308 aaacacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtccaatacaaaaaatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002491 aaacacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtccaatacaaaaaatg 11002392  T
Q  408 gatggagttgtt 419  Q
    ||||||||||||    
T  11002391 gatggagttgtt 11002380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 10968608 - 10968204
Alignment:
Q  11 cataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggt 110  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||  || || ||  | ||||||||| ||||||||    
T  10968608 cataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggt 10968509  T
Q  111 gcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctcc 210  Q
    |||||||||||  | ||||||||||||| ||| |||||||||||||||||||| || | ||| || ||||||||  | ||||| ||||   |||| ||||    
T  10968508 gcccaatttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcc 10968409  T
Q  211 ttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaa 310  Q
    | |||| ||| |||||||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||    
T  10968408 taacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaa 10968309  T
Q  311 cacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtccaatacaaaaaatggat 410  Q
    ||||||||||||||||| |||||| || |||||| | | |||| ||||||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  10968308 cacgacgctttgactagattgcgactcgagccaacttagacactcattttcatcttctccataagaagcggtaatcaatggtccaatacaaaaaatggat 10968209  T
Q  411 ggagt 415  Q
    |||||    
T  10968208 ggagt 10968204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 10982558 - 10982156
Alignment:
Q  11 cataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggt 110  Q
    |||||||||||||||||| | ||||||||| || ||||||||||||||||| |||||||||||||| |  || || ||  | ||||||||| ||||||||    
T  10982558 cataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggt 10982459  T
Q  111 gcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctcc 210  Q
    ||||||||||| || ||||||||| |||| || |||||||||||||||||||| || | ||| || ||||||||  | ||||| || |   |||||||||    
T  10982458 gcccaatttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcc 10982359  T
Q  211 ttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaa 310  Q
    | | || ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||    
T  10982358 taataacccacaagaatctttgctcacttttttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaa 10982259  T
Q  311 cacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtccaatacaaaaaatggat 410  Q
    ||||||||||||| |||||||||| ||||||||| | | |||||||||||||||| ||||||| |||||||  |||||||||||| |||| |||||||||    
T  10982258 cacgacgctttgaataggttgcgactcaagccaacttagacacccattttcatcttctccatatgaagatgcgatcaaaggtccagtacagaaaatggat 10982159  T
Q  411 gga 413  Q
    |||    
T  10982158 gga 10982156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 11019172 - 11018828
Alignment:
Q  8 aatcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgt 107  Q
    |||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || || |  ||||||||||| ||| |||||    
T  11019172 aatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgt 11019073  T
Q  108 ggtgcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgc 207  Q
    || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||||||| |  |  ||  ||| ||  || |    
T  11019072 ggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagtctggttcac 11018973  T
Q  208 tccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaa 307  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||    
T  11018972 tcctaacaacccacaagaatctttgctcacttttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccatgcttccaaagctcaa 11018873  T
Q  308 aaacacgacgctttgactaggttgcgagtcaagccaaatcaaaca 352  Q
     ||||||||||||||||| ||||||||||| |||||| |||||||    
T  11018872 caacacgacgctttgacttggttgcgagtcgagccaactcaaaca 11018828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 11079931 - 11079575
Alignment:
Q  9 atcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtg 108  Q
    ||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||    || || | ||||| | ||||||    
T  11079931 atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtg 11079832  T
Q  109 gtgcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgct 208  Q
    ||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |     |||||    
T  11079831 gtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgct 11079732  T
Q  209 ccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaa 308  Q
    ||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||| ||| |  |||||||||||||||||||| | ||||||||| |||||     
T  11079731 cctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagccttagaaaatctccctaagcttccaaagctcaac 11079632  T
Q  309 aacacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatct 365  Q
    || |||||||||||||  || || || || |||||| ||||||||||| ||| ||||    
T  11079631 aaaacgacgctttgacctggctgtgaatcgagccaactcaaacacccacttttatct 11079575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 11050288 - 11050229
Alignment:
Q  8 aatcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcac 67  Q
    |||||| ||||| |||||| ||||||||||||| || |||||||||||||||||| ||||    
T  11050288 aatcattggcaccccttcataaatagcttccaacacggagttccatccacaatgaatcac 11050229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 18300125 - 18300188
Alignment:
Q  293 gcttccaaaactcaaaaacacgacgctttgactaggttgcgagtcaagccaaatcaaacaccca 356  Q
    ||||||||| ||||||||||| || ||||||||||||||| |||  |||||| |||||||||||    
T  18300125 gcttccaaagctcaaaaacacaacactttgactaggttgcaagttgagccaactcaaacaccca 18300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 4256446 - 4256408
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaactga 82  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  4256446 tgagttccatcctcaatgagtcaagaatccaccaactga 4256408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 4490190 - 4490156
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaa 78  Q
    ||||||||||||||||||||||| |||||||||||    
T  4490190 tgagttccatccacaatgagtcaagaatccaccaa 4490156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 4493252 - 4493286
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaa 78  Q
    ||||||||||||||||||||||| |||||||||||    
T  4493252 tgagttccatccacaatgagtcaagaatccaccaa 4493286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 4557422 - 4557456
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaa 78  Q
    ||||||||||||||||||||||| |||||||||||    
T  4557422 tgagttccatccacaatgagtcaagaatccaccaa 4557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 4592528 - 4592562
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaa 78  Q
    ||||||||||||||||||||||| |||||||||||    
T  4592528 tgagttccatccacaatgagtcaagaatccaccaa 4592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 4516619 - 4516656
Alignment:
Q  45 gagttccatccacaatgagtcacgaatccaccaactga 82  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  4516619 gagttccatccacaatgagtcaagaatcctccaactga 4516656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 3086717 - 3086751
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaa 78  Q
    ||||||||||||||||||||||| |||||||||||    
T  3086717 tgagttccatccacaatgagtcaagaatccaccaa 3086751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 3519 - 3483
Alignment:
Q  44 tgagttccatccacaatgagtcacgaatccaccaact 80  Q
    ||||||||||||||||||||| | |||||||||||||    
T  3519 tgagttccatccacaatgagttaagaatccaccaact 3483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 24462263 - 24462307
Alignment:
Q  35 ttccaatactgagttccatccacaatgagtcacgaatccaccaac 79  Q
    |||||| |||||||||||||||||||||||||  ||| |||||||    
T  24462263 ttccaacactgagttccatccacaatgagtcaaaaatgcaccaac 24462307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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