View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17196_high_8 (Length: 419)
Name: NF17196_high_8
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 40181684 - 40182079
Alignment:
| Q |
20 |
actagattggtcaagtctttgttgtacctgcgcccacgtgtagaagcattactaagaagactcatcactttctggaaatctttggaggcggtgatgacgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40181684 |
actagattggtcaagtctttgttgtacctgcgcccacgtgtagaagcattactaagaagactcatcactttctgtaaatctttggaggcggtgatgacgt |
40181783 |
T |
|
| Q |
120 |
tgtcgtcgttgtcacgatatgtaaacgagggattacatgaagtggatgatgatgatgattgacttagaaagttggagaaaatgaccttgttagggttagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40181784 |
tgtcgtcgttgtcacgatatgtaaacgagggattacatgaagtggatgatgatgatgattgacttagaaagttggagaaaatgaccttgttagggttagg |
40181883 |
T |
|
| Q |
220 |
aattcttcgtgtggatgatgatgaggaggaag------aagaagaagtgatgtagttcctgccatatcttgctgcaaacgacacccacatcttcttatat |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
40181884 |
aattcttcgtgtggatgatgataaggaggaagaagaagaagaagaagtgatgtagttcctgccatatcttgctgcaaacgacacccacatctgcatatat |
40181983 |
T |
|
| Q |
314 |
atagtttgcgagtgagaatcggttggagacaaacggcacacacacggctaggtttaggtttactgagcgattgagaatgttgaactctaacctatg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40181984 |
atagtttgcgagtgagaatcggttggagacagacggcacacacacggctaggtttaggtttactgagcgattgagaatgttgaactctaacctatg |
40182079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 38606229 - 38606264
Alignment:
| Q |
64 |
agcattactaagaagactcatcactttctggaaatc |
99 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38606229 |
agcattactaagaagactcatcactttatggaaatc |
38606264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 44459176 - 44459145
Alignment:
| Q |
68 |
ttactaagaagactcatcactttctggaaatc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44459176 |
ttactaagaagactcatcactttctggaaatc |
44459145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 44466709 - 44466678
Alignment:
| Q |
68 |
ttactaagaagactcatcactttctggaaatc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44466709 |
ttactaagaagactcatcactttctggaaatc |
44466678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University