View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_12 (Length: 416)
Name: NF17196_low_12
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 42224731 - 42224345
Alignment:
| Q |
20 |
caactcacccccctctaccatctctaaatgcactgtgatcaattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaagcgctaa |
119 |
Q |
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| T |
42224731 |
caactcacccccctctaccatctctaaatgcattgtgatcaattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaagcactaa |
42224632 |
T |
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| Q |
120 |
atattttatcatatttaagannnnnnnnattgatttgtgcctgtaatgccatgttggggcaagaattttctctcnnnnnnnnctaggttaaagaagaata |
219 |
Q |
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| T |
42224631 |
atattttatcatatttaagattttttttattgatttgtgcctgtaatgccatgttggggcaagaattttctctcttttttttctaggttaaagaagaata |
42224532 |
T |
|
| Q |
220 |
tggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgnnnnnnnnnnnnnnnntccaggccaacttttattgcgatatggaag |
319 |
Q |
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| T |
42224531 |
tggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgaaaataaaaataaaaatccaggccaacttttattgcgatatggaag |
42224432 |
T |
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| Q |
320 |
aaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactgtacggtctgcctatg |
406 |
Q |
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| T |
42224431 |
aaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactatacggtctgcctatg |
42224345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 36675385 - 36675453
Alignment:
| Q |
292 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagc |
360 |
Q |
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| T |
36675385 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagc |
36675453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 36685467 - 36685535
Alignment:
| Q |
292 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagc |
360 |
Q |
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||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| |
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| T |
36685467 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagc |
36685535 |
T |
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