View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17196_low_13 (Length: 416)

Name: NF17196_low_13
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17196_low_13
NF17196_low_13
[»] chr3 (2 HSPs)
chr3 (15-416)||(3898778-3899179)
chr3 (19-416)||(46283103-46283506)
[»] scaffold0137 (1 HSPs)
scaffold0137 (15-416)||(5109-5510)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 3899179 - 3898778
Alignment:
Q  15 aaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3899179 aaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 3899080  T
Q  115 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3899079 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcgaagg 3898980  T
Q  215 aggaagaaggtagaaagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattct 314  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3898979 aggaagaaggtagaaagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatccgagttggagaatgtttgtggtagtattct 3898880  T
Q  315 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3898879 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 3898780  T
Q  415 tt 416  Q
    ||    
T  3898779 tt 3898778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 46283103 - 46283506
Alignment:
Q  19 agagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccag 118  Q
    |||||| ||||||||| ||  |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| |||||||     
T  46283103 agagaacagtatgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccat 46283202  T
Q  119 cctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttc-------ga 211  Q
    | |||||||||||| | ||||||| ||||||  |||| |||||||||||||||| ||||| | | || ||||| |||| ||||||| ||||       ||    
T  46283203 catcagagcttagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttcttcgattga 46283302  T
Q  212 a--ggaggaagaaggtagaaagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagt 309  Q
    |  | |||||||||||||||||||||||||| ||   ||||||| ||| ||| | ||||  |||||||||||||| ||||||  ||||||||||||||||    
T  46283303 acagaaggaagaaggtagaaagaatgaagatcat---gttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagt 46283399  T
Q  310 attctggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatgg 409  Q
    |||||||||||| |||||||||| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||    
T  46283400 attctggagttgttggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttgg 46283499  T
Q  410 ctgagtt 416  Q
    |||||||    
T  46283500 ctgagtt 46283506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 5510 - 5109
Alignment:
Q  15 aaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5510 aaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 5411  T
Q  115 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5410 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcaaagg 5311  T
Q  215 aggaagaaggtagaaagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattct 314  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5310 aggaagaaggtagaaagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatcagagttggagaatgtttgtggtagtattct 5211  T
Q  315 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5210 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 5111  T
Q  415 tt 416  Q
    ||    
T  5110 tt 5109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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