View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_14 (Length: 411)
Name: NF17196_low_14
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 240 - 402
Target Start/End: Complemental strand, 18151046 - 18150884
Alignment:
| Q |
240 |
cagtgtgcgatttaaaaaatcagtatgcaaaacaagacatcatgtagaatttagaagcctagagtgtgctttaaaattcacaatcctctactctaatata |
339 |
Q |
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| T |
18151046 |
cagtgtgcgatttaaaaaatcagtatgcaaaacaagacatcatgtagaatttagaagcctagagtgtgctttaaaattcacaatcctctaccctaatata |
18150947 |
T |
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| Q |
340 |
aacattcacagcaccaccgcagcaacaattttcaaccgtagtcactaccataaacagtataat |
402 |
Q |
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| T |
18150946 |
aacattcacagcaccaccgcagcaacaattttcaaccgtagtcactaccataaacagcataat |
18150884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 18151266 - 18151121
Alignment:
| Q |
19 |
gtatgggatgacgcaacttttcagagtcaccaggtacaaatcctatggacacacttctaatgctagaggtatcaagattcaagactcaaaattctccatg |
118 |
Q |
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| T |
18151266 |
gtatgggatgacgcaacttttcagagtcaccaggtacaaatcctatggacacacttctaatgctagaggtatcaagattcaagactcaaaattctccatg |
18151167 |
T |
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| Q |
119 |
aaaaggaaacaaattctttctagtttgaatgtcaataaaaattcat |
164 |
Q |
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| T |
18151166 |
aaaaggaaacaaattctttctagtttgaatgtcaataaaaattcat |
18151121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 18158293 - 18158218
Alignment:
| Q |
254 |
aaaaatcagtatgcaaaacaagacatcatgtagaatttagaagcctagagtgtgctttaaaattcacaatcctcta |
329 |
Q |
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| T |
18158293 |
aaaaatcagtatgcaaaactagacatcatttaggatttagaagcctaaagtgagctttaaaattcacaatcctcta |
18158218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 18158345 - 18158288
Alignment:
| Q |
99 |
aagactcaaaattctccatgaaaaggaaacaaattctttctagtttgaatgtcaataaaaat |
160 |
Q |
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| T |
18158345 |
aagactcaaaattctccatgaaagggaaacaaa----ttctagtttgaatgtcaataaaaat |
18158288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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