View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17196_low_15 (Length: 388)
Name: NF17196_low_15
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28772986 - 28772777
Alignment:
| Q |
1 |
cgcaatcttgattgtaatattctgtcatagcttctacaatgcagccctaaagtatagcnnnnnnnnnnnn--ctatgacaggcacacagttgtcgaagac |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28772986 |
cgcaatcttgattgtaatattctgtcatagcttctacaatgcaaccctaaagtatagcaaaaaaaaaaaaaactatgacaggcacacagttgtcgaagac |
28772887 |
T |
|
| Q |
99 |
gtaactccatggtccatctttgtgttcttgtgttccttatgtcatgagccgatttttgtcctcaaaagataaattcaatatccaaatctattttctcaaa |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28772886 |
gtaactccatgatccatctttgtgttcttgtgttccttatgtcatgagccgatttttgtcctcaaaagataaattcaatatccaaatctattttctcaaa |
28772787 |
T |
|
| Q |
199 |
aataattcag |
208 |
Q |
| |
|
|||||||||| |
|
|
| T |
28772786 |
aataattcag |
28772777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 28786830 - 28786693
Alignment:
| Q |
71 |
ctatgacaggcacacagttgtcgaagacgtaactccatggtccatctttgtgttcttgtgttccttatgtcatgagccgatttttgtcctcaaaagataa |
170 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28786830 |
ctatggcaggcacacagttgtcgaagacgtaactccatgatccatctttgtgttcttgtgtgccttatgtcatgagccgatttttgttctcaaaagataa |
28786731 |
T |
|
| Q |
171 |
attcaatatccaaatctattttctcaaaaataattcag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28786730 |
attcaatatccaaatctattttctcaaaaataattcag |
28786693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 28786628 - 28786534
Alignment:
| Q |
273 |
tacaaactacaacttaattccaagataggtaaaatgaaagtaggacttcaactgatttgaagaaattaagtaatgaaaaatattactttggtttc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28786628 |
tacaaactacaacttaattccaagataggtaaaatgaaagtaggacttcaactgatttgaagaaattaagtgatgaaaaatattactttggtttc |
28786534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 28772662 - 28772591
Alignment:
| Q |
299 |
aggtaaaatgaaagtaggacttcaactgatttgaagaaattaagtaatgaaaaatattactttggtttcggg |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
28772662 |
aggtaaaatgaaagtaggacttcaactgatttgaagaaattaaatgatgaaaaatattactttggtttcggg |
28772591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University