View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_16 (Length: 385)
Name: NF17196_low_16
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 32969627 - 32969267
Alignment:
| Q |
1 |
gtttggagtagtggtatacctggtagttaaaaacaacacttatgaaaaggacacaggatgtgatgctccatagttcaatggtatcattgtt--aaattac |
98 |
Q |
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| T |
32969627 |
gtttggagtagtggtatacttggtagttaaaaacaacacttatgaaaaggacataggatgtgatgctccatagttcaatggtatcattgttttaaattac |
32969528 |
T |
|
| Q |
99 |
ttatgacttgccaaaatttgaagaaaaaataaattccctctatgcataaacttcagatattcacaagcagttttgctgagccaaatgtgctcaaaagcat |
198 |
Q |
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| T |
32969527 |
ttatgacttgccaaaatttgaagaaaaaataaattccctctatgcataaacttcagatattcacaagcagttttgctgagccaaatgtgctcaaaagcat |
32969428 |
T |
|
| Q |
199 |
atacatttcaagtctacaagagatgcatagtgct-atcggaatatatacaatgattactttatatacaatctctattctattctagtttgatgctgcttc |
297 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32969427 |
atacatttcaagtctacaagagatgcctagtgctaatcggaatatatacaatgataactttatatacaatctctattctattctagtttgatgctgcttc |
32969328 |
T |
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| Q |
298 |
tatttaacttgtgatgttttcttgtggtaatgatttattagcactctgtcacaagtgtatg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32969327 |
tatttaacttgtgatgttttcttgtggtaatgatttattagcactctgtcacaagtgtatg |
32969267 |
T |
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