View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_20 (Length: 351)
Name: NF17196_low_20
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 27510171 - 27509840
Alignment:
| Q |
1 |
aggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaa |
100 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27510171 |
aggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaa |
27510072 |
T |
|
| Q |
101 |
aatggtccatcttatcaatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |
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| T |
27510071 |
aatggtccatcttatcaatttaagcagtatttctggaagaattagtaatattaattatgcggcttcatat-ttttgttttcaaagcattatagag-tggt |
27509974 |
T |
|
| Q |
201 |
tctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27509973 |
tctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactct |
27509874 |
T |
|
| Q |
301 |
tattatttgccttgtgtactttctgctaccaagt |
334 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
27509873 |
tattatttgccttgtgtactttctgctacgaagt |
27509840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 27271258 - 27271564
Alignment:
| Q |
24 |
atagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaa |
123 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
27271258 |
atagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaa |
27271357 |
T |
|
| Q |
124 |
gcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgta |
223 |
Q |
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||| ||||||| |||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
27271358 |
gcactatttctggaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgta |
27271453 |
T |
|
| Q |
224 |
ctcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactcttattatttgccttgtgtactttc |
323 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
27271454 |
ctctattggttgtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttc |
27271553 |
T |
|
| Q |
324 |
tgctaccaagt |
334 |
Q |
| |
|
|||| |||||| |
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| T |
27271554 |
tgctgccaagt |
27271564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 39210762 - 39211096
Alignment:
| Q |
1 |
aggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39210762 |
aggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaa |
39210861 |
T |
|
| Q |
101 |
aatggtccatcttatcaatttaagcagtatttctagaagaattagtaa---tattaattatgccgcttcatattttttgttttcaaagcattatagagtt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| | |
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| T |
39210862 |
aatggtccatcttatcaatttaagcagtatttctggaagaattagtaatagtattaattatgccacttcata-tttttgttttcaaagcattatagag-t |
39210959 |
T |
|
| Q |
198 |
ggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39210960 |
ggttctattctgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaattaacaaattgtgagatgtac |
39211059 |
T |
|
| Q |
298 |
tcttattatttgccttgtgtactttctgctaccaagt |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39211060 |
tcttattatttgccttgtgtactttctgctaccaagt |
39211096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 35 - 334
Target Start/End: Complemental strand, 29707587 - 29707292
Alignment:
| Q |
35 |
tatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttct |
134 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
29707587 |
tatcattgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaatttaagtagtatttct |
29707488 |
T |
|
| Q |
135 |
agaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgtactcttttggtt |
234 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
29707487 |
tgaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgtactctattggtt |
29707392 |
T |
|
| Q |
235 |
gtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactcttattatttgccttgtgtactttctgctaccaagt |
334 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29707391 |
gtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttctgctaccaagt |
29707292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 42093510 - 42093383
Alignment:
| Q |
208 |
tgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactcttattatt |
307 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||| || |||||| | |
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| T |
42093510 |
tgagttgagaaatgtactgttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
42093411 |
T |
|
| Q |
308 |
tgccttgtgtac-tttctgctaccaagt |
334 |
Q |
| |
|
|||||| ||||| ||||||||||||||| |
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|
| T |
42093410 |
tgccttatgtacttttctgctaccaagt |
42093383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 31949744 - 31949887
Alignment:
| Q |
2 |
ggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaa |
101 |
Q |
| |
|
|||||||| ||||||| || |||| |||||| ||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| | ||||||| |||| |
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| T |
31949744 |
ggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggtgaaa |
31949843 |
T |
|
| Q |
102 |
atggtccatcttatcaatttaagcagtatttctagaagaattag |
145 |
Q |
| |
|
||||||| ||||||| |||| ||||| ||||| ||||||||| |
|
|
| T |
31949844 |
atggtccgtcttatcgatttgagcagcttttctgaaagaattag |
31949887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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