View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_21 (Length: 341)
Name: NF17196_low_21
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 46873175 - 46872867
Alignment:
| Q |
15 |
cacagaaacaaccattgacaaaacaacatcagcaaacaaaagaacccccaaaaccatcatcatcttcaataaacctaaaccagagtaaaaacacctcttt |
114 |
Q |
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| T |
46873175 |
cacagaaacaaccattgacaaaacaacatcagcaaacaaaagaacccccaaaaccatcatcatcttcaataaacctaaaccagagtaaaaacacctcttt |
46873076 |
T |
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| Q |
115 |
tcaccctttttctttctttcaattctctgaacaacatgatttgatttagcacttgacttgataacaggagtagacggcgctattacaccgtcagaactgt |
214 |
Q |
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| T |
46873075 |
tcaccctttttctttctttcaattctctgaacaacatgatttgatttagcacttgacttgataacaggagtagacggcgctattacaccgtcagaactgt |
46872976 |
T |
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| Q |
215 |
tttcgggtgtggagaaaatggaagaatcaatggaaattggagtgatgttattgataacattgttgggttttgaagatgagaatttggttaaagaactatt |
314 |
Q |
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| T |
46872975 |
tttcgggtgtggagaaaatggaagaatcaatggaaattggagtgatgttattgttaacattgttgggttttgaagatgagaatttggttaaagaactatt |
46872876 |
T |
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| Q |
315 |
gggtatgag |
323 |
Q |
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| T |
46872875 |
gggtatgag |
46872867 |
T |
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