View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_23 (Length: 318)
Name: NF17196_low_23
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 55493374 - 55493659
Alignment:
| Q |
16 |
atgtaactaagaatataaacctgatttctataaggataaatataatctgaggtgagctcaacgtatttgcacttcatgatacctgccggaccacccctga |
115 |
Q |
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| T |
55493374 |
atgtaactaagaatataaacctgatttctataaggataaatataatctgaggtgagctcaacgtatttgcacttcatgatacctgccggaccacccctga |
55493473 |
T |
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| Q |
116 |
aaccatacaatgtgcttccttttgctctatcttgtaaataatctataaccaaaatcaaatttacaaattaaaaattgaatatttctacaaatattgattc |
215 |
Q |
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| T |
55493474 |
aaccatacaatgtgcttccttttgctctatcttgtaaataatctataaccaaaatcaaatttacaaattaaaaattgaatatttctacaaatattgattc |
55493573 |
T |
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| Q |
216 |
tgttgaattgaaaactatcatatcttaccgaaaattcccgaaatcacattgtgaccaccaggagcttgcccaccggacaaaaccac |
301 |
Q |
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| T |
55493574 |
tattgaattgaaaactatcatatcttaccgaaaattcccgaaatcacattgtgaccaccaggagcttgcccaccggacaaaaccac |
55493659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 8870555 - 8870655
Alignment:
| Q |
34 |
acctgatttctataaggataaatataatctgaggtgagctcaacgtatttgcacttcatgatacctgccggaccacccctgaaaccatacaatgtgcttc |
133 |
Q |
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| T |
8870555 |
acctgatttctgtaaggataaatataatcagagttaagttcaacatatttgcccttcataatcccagcaggaccacctttgaaaccatacaatgtgcttc |
8870654 |
T |
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| Q |
134 |
c |
134 |
Q |
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| T |
8870655 |
c |
8870655 |
T |
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