View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_24 (Length: 305)
Name: NF17196_low_24
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_24 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 18150610 - 18150913
Alignment:
| Q |
1 |
tggtaatgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcattcaaccctagatgagatgatgatgatgaa |
100 |
Q |
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| T |
18150610 |
tggtaacgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcattcaaccctagatgagatgatgatgat--- |
18150706 |
T |
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| Q |
101 |
gaagttgataattaattttcttagggttttggttttcaatttgttgaatatatgtatagctgcaaatgcacaaaattgg--tttcacgtggcaataaata |
198 |
Q |
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| T |
18150707 |
gaagttgagaattaattttcttagggttttgtttttcaatttgttgaatatatgtatagctgcaaatgcacaaaattggtttttcacgtggcaataaata |
18150806 |
T |
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| Q |
199 |
atgannnnnnnaatatccatttaattcttttcatttgtgatgtttaagcttcgttttgaattgttattgctgttaaaattatgctgtttatggtagtgac |
298 |
Q |
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| T |
18150807 |
atgatttttttaatatccatttaattcttttgatttgtgatgtttaagcttcgttttgtattgttattgctgttaaaattatgctgtttatggtagtgac |
18150906 |
T |
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| Q |
299 |
tacggtt |
305 |
Q |
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| T |
18150907 |
tacggtt |
18150913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 18157873 - 18158146
Alignment:
| Q |
1 |
tggtaatgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcattcaaccctagatgagatgatgatgatgaa |
100 |
Q |
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| T |
18157873 |
tggtaacggtgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcatccaaccctaga---gaagatgatgatgat |
18157969 |
T |
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| Q |
101 |
gaagttgataattaa------------ttttcttagggttttggttttcaatttgttgaat-atatgtatagctgcaaatgcacaaaattgg--tttcac |
185 |
Q |
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| T |
18157970 |
gaagttgagaattaattttgttgttagttttgttaggattttgattttcaagttgttgaatgatatgtataggtgcaaatgcacaaaattggtttttcta |
18158069 |
T |
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| Q |
186 |
gtggcaataaataatga-nnnnnnnaatatccatttaattcttttcatttgtgatgtttaagcttcgttttgaattgt |
262 |
Q |
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| T |
18158070 |
gtggcaataaatattgattttttttaatatccttctaattcttttga-ttgtgatgtttaaacttcgtttagaattgt |
18158146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18161584 - 18161655
Alignment:
| Q |
1 |
tggtaatgatgaagtttgggttagtttttctattaataggagt---aggagaaatcaagatcaagattcttc |
69 |
Q |
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| T |
18161584 |
tggtaacggtgaagtttgggttagtttttctattaacaggagtaggaggagaaatcaagatcaagcttcttc |
18161655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 18161774 - 18161829
Alignment:
| Q |
92 |
gatgatgaagaagttgataattaattttcttagggttttggttttcaatttgttga |
147 |
Q |
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| T |
18161774 |
gatgatgaataagttgagaattaattttgttaggattttggttttcaatttgttga |
18161829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 52897557 - 52897609
Alignment:
| Q |
127 |
ttttggttttcaatttgttgaat-atatgtatagctgcaaatgcacaaaattg |
178 |
Q |
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| T |
52897557 |
ttttggttttcaatttgttgaatgatatgtatcggtgaaaatgcacaaaattg |
52897609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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