View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_25 (Length: 279)
Name: NF17196_low_25
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 28938734 - 28939003
Alignment:
| Q |
1 |
tatttaaccgattttgtacctgtatgaggcctttgacgcgccaaacattgtgtctcataaccacaatttgtgaatcataagggtgtcttaatctaagttc |
100 |
Q |
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| T |
28938734 |
tatttaaccgattttgtacctgtatgaggcctttgacgcgccaaacattgtgtctcataaccacaatttgtgaatcataagggtgtcttaatctaagttc |
28938833 |
T |
|
| Q |
101 |
atctctcactctttcaaggttaacattatgttctgcagataattgtatggctgatgtttcccttgttgccctctctagtcttcctaacaccacccttgag |
200 |
Q |
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| T |
28938834 |
atctctcactctttcaaggttaacattatgttctgcagataattgtatggctgatgtttcccttgttgccctctctagtcttcctaacaccacccttgag |
28938933 |
T |
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| Q |
201 |
tcaccagaatttgcaatatataccagtccattgcaaattatccccaccaaacaacaagtacctgatgatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28938934 |
tcaccagaatttgcaatatataccagtccattgcaaattatccccaccaaacaacaagtacctgctgatg |
28939003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 40326514 - 40326761
Alignment:
| Q |
15 |
tgtacctgtatgaggcctttgacgcgccaaacattgtgtctcataaccacaatttgtgaatcataagggtgtcttaatctaagttcatctctcactcttt |
114 |
Q |
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||||||||||||| |||||| || |||||||| |||| ||||||||||||| ||||||||||| ||||| || | | || ||||||||| | ||| |
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| T |
40326514 |
tgtacctgtatgatgcctttcacacgccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagttt |
40326613 |
T |
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| Q |
115 |
caaggttaacattatgttctgcagataattgtatggctgatgtttcccttgttgccctctctagtcttcctaacaccacccttgagtcaccagaatttgc |
214 |
Q |
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| T |
40326614 |
ctatattaacattgtgttctgtagataactgaacggctaatgtttcccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgc |
40326713 |
T |
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| Q |
215 |
aatatataccagtccattgcaaattatccccaccaaacaacaagtacc |
262 |
Q |
| |
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|||||| | || || ||||||||||||||| |||||||||| ||||| |
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| T |
40326714 |
aatatacagcataccgttgcaaattatccccgccaaacaacatgtacc |
40326761 |
T |
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