View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_29 (Length: 256)
Name: NF17196_low_29
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 43555679 - 43555455
Alignment:
| Q |
17 |
catcatcatcaaatggcagaagcacgttctaatgaatcgcttgaaatcacaaacgaaaatgagttcacagaaaaggaagctgctgagcaacttattcagc |
116 |
Q |
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| T |
43555679 |
catcatcatcaaatggcagaagcacgttctaatgtatcgcttgaaatcacaaacgaaaatgagttcacagaaaaggaagctgctgagcaacttattcagc |
43555580 |
T |
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| Q |
117 |
tgagcaatgaagttaggatcagtagcagcaagaggaatatgattacattggaaaaaggattggagttggttgatgaagccataactaagattgaatctca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43555579 |
tgagcaatgaagttaggatcagtagcagcaagaggaatatgattacattggaaaaaggattggagttggttgatgaatccataactaagattgaatctca |
43555480 |
T |
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| Q |
217 |
tcagccaaagaatcatcattatgag |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
43555479 |
tcagccaaagaatcatcattatgag |
43555455 |
T |
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