View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17196_low_3 (Length: 712)

Name: NF17196_low_3
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17196_low_3
NF17196_low_3
[»] chr3 (1 HSPs)
chr3 (23-700)||(44473530-44474209)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 23 - 700
Target Start/End: Complemental strand, 44474209 - 44473530
Alignment:
Q  23 cccttccttccttccacttccatttcccatttcattatttagttgagatcgattgatccctttctcgcttcatcaatgatgtatgcagtattttggttgc 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44474209 cccttccttccttccacttccatttcccattttattatttagttgagatcgattgatccctttctcgcttcatcaatgatgtatgtagtattttggttgc 44474110  T
Q  123 tttgggaaatgtaaaataacccgagggagtactatttatcaagtataataaaattttgttattattctaagtcgttgtgtaattttatgagaattgatcg 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44474109 tttgagaaatgtaaaataacccgagggagtactatttatcaagtataataaaattttgttattattctaagtcgttgtgtaattttatgagaattgatcg 44474010  T
Q  223 gttgannnnnnnnnnnnnn--gggtggttccttggaatgtctatggtttcgaggttgcttgtttattttagtaacagttttctttatgccactggatggc 320  Q
    |||||                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44474009 gttgattttttttttttttttggggggttccttggaatgtctatggtttcgaggttgcttgtttattttagtaacagttttctttatgccactggatggc 44473910  T
Q  321 tacaatgtggcagtctttgaaattggtgatgagtccggtgacttttgaagagtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacag 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473909 tacaatgtggcagtctttgaaattggtgatgagtccggtgacttttgaagagtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacag 44473810  T
Q  421 acaatggatgtgtttatgctactggtctcaatgattttggacagctcggtacatcggagagtaaaccctactcagttgtatgattactttgccttttttc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473809 acaatggatgtgtttatgctactggtctcaatgattttggacagctcggtacatcggagagtaaaccctactcagttgtatgattactttgccttttttc 44473710  T
Q  521 ctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttcttttgctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgat 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473709 ctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttcttttgctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgat 44473610  T
Q  621 attttattcacttgtctgtaatgtttcaggtgccacttcaagtttttgggcacgagaagaaagttgtacggatctctgct 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473609 attttattcacttgtctgtaatgtttcaggtgccacttcaagtttttgggcacgagaagaaagttgtacggatctctgct 44473530  T

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