View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_30 (Length: 253)
Name: NF17196_low_30
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12149584 - 12149346
Alignment:
| Q |
1 |
aaaaattagtattaccatctttgttgtccaagtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgc |
100 |
Q |
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| T |
12149584 |
aaaaattagtattaccatctttgttgtccaagtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgc |
12149485 |
T |
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| Q |
101 |
cttggaattcattttcaagaagtactcactttgaaac----ttatgtgtatcgatataagtatatgatggatgaaaatgaagttgctgaatgttgggtat |
196 |
Q |
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| T |
12149484 |
cttggaattcattttcaagaagtactcactttgaaacttaattatgtgtatcgatataagtatatgatggatgaaaatgaagttgctcaatgttgggtat |
12149385 |
T |
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| Q |
197 |
ttataggaaagaataagagcattaaattattttgttctt |
235 |
Q |
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| T |
12149384 |
ttataggaaagaataagagcattaaattattttgttctt |
12149346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 12164067 - 12163866
Alignment:
| Q |
2 |
aaaattagtattaccatctttgttgtccaagtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgcc |
101 |
Q |
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| T |
12164067 |
aaaactagtattaccatctttgttgtccaagtctttgggtgcagactctgcacatataagaaggatggtagccaacagcatggctaggaaaagtaaagcc |
12163968 |
T |
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| Q |
102 |
ttggaattcattttcaagaagtactcactttgaaacttatgtgtatcga-tataagtatatgatggatgaaaatgaagttgctgaatgttgggtatttat |
200 |
Q |
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| T |
12163967 |
tttgaattcatttttataaagtactctctatgaaacttatatgtatctaggaaaagtat-tgattgatgaaaatgaagtgaccaaatgttgggtatttat |
12163869 |
T |
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| Q |
201 |
agg |
203 |
Q |
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| T |
12163868 |
agg |
12163866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 12146248 - 12146339
Alignment:
| Q |
24 |
ttgtccaagtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcatttt |
115 |
Q |
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| T |
12146248 |
ttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
12146339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 12175387 - 12175328
Alignment:
| Q |
57 |
atgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttc |
116 |
Q |
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| T |
12175387 |
atgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttc |
12175328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 12188359 - 12188300
Alignment:
| Q |
57 |
atgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttc |
116 |
Q |
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||||||||||||||||||| |||||| | |||||||||||| | ||||||||||||||| |
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| T |
12188359 |
atgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttc |
12188300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12182354 - 12182296
Alignment:
| Q |
57 |
atgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcatttt |
115 |
Q |
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||||||||||||||||||| |||||| | |||||||||||| | |||||||||||||| |
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| T |
12182354 |
atgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcatttt |
12182296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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