View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17196_low_40 (Length: 236)

Name: NF17196_low_40
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17196_low_40
NF17196_low_40
[»] chr7 (2 HSPs)
chr7 (1-84)||(42147004-42147087)
chr7 (145-222)||(42147148-42147225)
[»] chr2 (1 HSPs)
chr2 (16-61)||(12947127-12947172)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 42147004 - 42147087
Alignment:
Q  1 aacaagtaggaagatatgaacaatgtttgtgtggtgataaccacaaatttaaatggtttaggcgtaaacttatcaccctaatgg 84  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42147004 aacaagtaggaagatatgaacaatgtttgtgtggtgataaccccaaatttaaatggtttaggcgtaaacttatcaccctaatgg 42147087  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 42147148 - 42147225
Alignment:
Q  145 aggtgtatttttgtttgtatgtctaaatgaattgaatttctgtttttgaccatacaagaattatcgggaatatatagt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42147148 aggtgtatttttgtttgtatgtctaaatgaattgaatttctgtttttgaccatacaagaattatcgggaatatatagt 42147225  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 12947172 - 12947127
Alignment:
Q  16 atgaacaatgtttgtgtggtgataaccacaaatttaaatggtttag 61  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||    
T  12947172 atgaaaaatgtttgtgtggtcataaccacaaatgtaaatggtttag 12947127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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