View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_45 (Length: 217)
Name: NF17196_low_45
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_45 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 36067358 - 36067175
Alignment:
| Q |
38 |
ttttgttgctcgaagctatatattggctctacctgctaatccgcgtttgtataacgaagaacctgttgtcgatgatgataatgatgctgctgatgaactt |
137 |
Q |
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| T |
36067358 |
ttttgttgctcgaagctatatattggctctacctgctaatccgcgtttgtataatgaagaacctgttgtcgatgatgataatgatgttgctgatgaactt |
36067259 |
T |
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| Q |
138 |
tttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatg----atatgaacctttaagggacact |
217 |
Q |
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| T |
36067258 |
gttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatatatatgaacctttaagggacact |
36067175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 29024622 - 29024513
Alignment:
| Q |
108 |
gatgatgataatgatgctgctgatgaactttttgttgaagaggataatagtgatgatgatagtagcaactcaacatagtgccccaatgatatgaaccttt |
207 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||| | | ||||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
29024622 |
gatgatgataatgatgtcgctgaagaacttgttgttgaagaggaagacatggatgatgatagtagcaactcaacatagtggctcaatcatatgaaccttt |
29024523 |
T |
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| Q |
208 |
aagggacact |
217 |
Q |
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| T |
29024522 |
aaggaacact |
29024513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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