View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_6 (Length: 577)
Name: NF17196_low_6
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 37302673 - 37302282
Alignment:
| Q |
8 |
aagcatagggtaatggtgtgaagctaagaaaggggacaaaaaaggagcgatgggtccaaggttaattattttcttaataagacgggttggggtatctttc |
107 |
Q |
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| T |
37302673 |
aagcttagggtaatggtgtgaagctaagaaaggggacaaaaaaggagcgatgggtccaaggttaattattttcttaataagacgggttggggtatctttc |
37302574 |
T |
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| Q |
108 |
tttttgttannnnnnncctcttagagacagagatggagtgagcatttagtgaggttgccggaggatatatgatcaattaaaagccaacttgacagatggg |
207 |
Q |
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| T |
37302573 |
tttttgttatttttttcctcttagagacagagatggagtgagcatttagtgaggttgccggaggatatatgatcaattaaaagccaacttgacagatggg |
37302474 |
T |
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| Q |
208 |
aaaaggttattattggataattcgatattgctgttgaggtatcgtccactagaattgtatctcgtttataatgagtagaactgtactactgttcgaagat |
307 |
Q |
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| T |
37302473 |
aaaaggttattattggataattcgatattgctgttgaggtatcgtccactagaattgtatctcgtttataatgagtagaactgtactactgttcgaagat |
37302374 |
T |
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| Q |
308 |
cggtattatttggtgtagttaaacgtcataaatttaaga-aaaattgttatttggacgctcatacattttctgtatacattgagagagaaaaataat |
403 |
Q |
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| T |
37302373 |
cggtattatttggtgcagttaaacgtcataaatttaagaaaaaaatgttatttggacgcttataca-----tatatacattgagagagaaaaataat |
37302282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 37302184 - 37302107
Alignment:
| Q |
485 |
tgttcaaatcattgctttgatttttaatgttatatactcaatttcaagtactaaaacgtatttacaaatatatttagt |
562 |
Q |
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| T |
37302184 |
tgttcaaatcattgctttgatttttaatgttatacactcaatgtcaagtactaaaacgtatttgcaaatatatttagt |
37302107 |
T |
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