View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_8 (Length: 489)
Name: NF17196_low_8
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 231 - 489
Target Start/End: Complemental strand, 12149833 - 12149579
Alignment:
| Q |
231 |
cactaaattattccactctaatagttaactaattagagatggattttcaatttttctatctctaaattcctatggttgtttaactttttctagcagtgag |
330 |
Q |
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| T |
12149833 |
cactaaattattccactctaatagttaactaattagagatggattttcaatttttctatctctaaattcctatggttgtttaactttttctagca----g |
12149738 |
T |
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| Q |
331 |
tgaagctatcttattttcatataacgtacaaataataaatactttaatttttaaacttagtatattattttactaagtttannnnnnncttgaaaaaatc |
430 |
Q |
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| T |
12149737 |
tgaagctatcttattttcatataacgtacaaataataaatactttattttttaaacttagtatattattttactaagtttatttttttcttgaaaaaatc |
12149638 |
T |
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| Q |
431 |
ttagtaaaattatgctaaacatataataatggtgggaaattatactaaatgtaaaaaat |
489 |
Q |
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| T |
12149637 |
ttagtaaaattatgctaaacatataataatggtgggaaattatactaaatgtaaaaaat |
12149579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 12149981 - 12149903
Alignment:
| Q |
156 |
ttgtgtctattttttctacaaaccataaataaaaaatataattaaattgtagtcaaatttacaacatctcgattgcacta |
235 |
Q |
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| T |
12149981 |
ttgtgtctattttttctacaaaccataaataaaaa-tataattaaattgtagtcaaatttataacatctcgattgcacta |
12149903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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