View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17196_low_9 (Length: 477)
Name: NF17196_low_9
Description: NF17196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17196_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 34254269 - 34253821
Alignment:
| Q |
14 |
caaaggtgaagactgtttaaagatgatttaattaaggtatcaaatcaatagctgagatcaattaatgcatgcagccgcgtatatttgtaaatgtagggaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254269 |
caaaggtgaagactgtttaaagatgatttaattaaggtatcaaatcaatagctgagatcaattaatgcatgcagccgcgtatatttgtaaatgtagggaa |
34254170 |
T |
|
| Q |
114 |
tccatatcccattaagtaatatcttcttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacagg |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254169 |
tccatatcccattaagtaatatcttcttacttgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacagg |
34254070 |
T |
|
| Q |
214 |
agaatcaataagaagaatgttggcaacagcnnnnnnntcgaaatgaaaatgatgtaacacacaatagttcatagcatacattttttgaatggttaaacaa |
313 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254069 |
agaatcaataagaagaatgttggcaactgcaaaaaaatcgaaatgaaaatgatgtaacacacaatagttcatagcatacattttttgaatggttaaacac |
34253970 |
T |
|
| Q |
314 |
aaaaccactcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253969 |
aaaaccactcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagc |
34253870 |
T |
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| Q |
414 |
aatagatgaacaaccaggaccaccattgaaccataaaagaagaggtttt |
462 |
Q |
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| T |
34253869 |
aatagatgaacaaccaggaccaccattgaaccataaaagaagaggtttt |
34253821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 322 - 455
Target Start/End: Complemental strand, 26641398 - 26641265
Alignment:
| Q |
322 |
tcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagcaatagatg |
421 |
Q |
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|||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
26641398 |
tcaccttgattccaagaataaggattaaaatgaaggtttttgccatctgaattaatatgaaaaggaccaatttcctcagcttcaccataagcaatagaag |
26641299 |
T |
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| Q |
422 |
aacaaccaggaccaccattgaaccataaaagaag |
455 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
26641298 |
aacaaccaggaccaccattgaaccacaaaagaag |
26641265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 320 - 455
Target Start/End: Complemental strand, 26633935 - 26633800
Alignment:
| Q |
320 |
actcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagcaataga |
419 |
Q |
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|||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26633935 |
actcaccttgattccaataataaggattaaaatgaaggtttttgccatctgaattaatatgaaaaggaccaatttcctcagcttcaccataagcaataga |
26633836 |
T |
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| Q |
420 |
tgaacaaccaggaccaccattgaaccataaaagaag |
455 |
Q |
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|||||||||||||||||||||| ||| |||||||| |
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| T |
26633835 |
agaacaaccaggaccaccattgagccacaaaagaag |
26633800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 288 - 455
Target Start/End: Complemental strand, 26626412 - 26626239
Alignment:
| Q |
288 |
catacattttttgaatggttaaacaaaaaaccactc------accttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatga |
381 |
Q |
| |
|
||||||||||| ||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| ||||| ||| ||| |||||||||||| |
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| T |
26626412 |
catacatttttggaaaggttaaacaaagaatcactctaaatcaccttgattccaagaatatggattaagatagagggttttggaatcagaattaatatga |
26626313 |
T |
|
| Q |
382 |
aaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaagaag |
455 |
Q |
| |
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||||| |||||||| ||||| |||||| |||||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
26626312 |
aaagggccaatttcttcagcttcaccaaaagcaatagaagaacaaccaggaccaccattgagccacaaaagaag |
26626239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 26634250 - 26634173
Alignment:
| Q |
139 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggaga |
216 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
26634250 |
cttacctgtcctcttatcgccattgttgagaatgtcagatgaattctttgaatatgaaaatccaactccaacaggaga |
26634173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 26626696 - 26626596
Alignment:
| Q |
140 |
ttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggagaatcaataagaagaatgttggcaa |
239 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||| ||| |||||||| |||||||||||||| ||||| || |||||| |||||||||||||| |
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| T |
26626696 |
ttacctgtcctcttatcgccattggtgagaatgtcagatgaattctttgaataggaaaatccaactccgacaggcgagtcaatataaagaatgttggcaa |
26626597 |
T |
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| Q |
240 |
c |
240 |
Q |
| |
|
| |
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| T |
26626596 |
c |
26626596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 26641723 - 26641616
Alignment:
| Q |
139 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatt------tgaatatgaaaatccaactccaacaggagaatcaataagaagaatg |
232 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||| ||| | ||| |||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
26641723 |
cttacctgtcctcttatcgccattgttgagaatgtcatcagatgaattctttgttgaatatgaaaatccaactccaacaggagagtcaatataaagaata |
26641624 |
T |
|
| Q |
233 |
ttggcaac |
240 |
Q |
| |
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|||||||| |
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| T |
26641623 |
ttggcaac |
26641616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 3332917 - 3332885
Alignment:
| Q |
184 |
atttgaatatgaaaatccaactccaacaggaga |
216 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
3332917 |
atttgaataagaaaatccaactccaacaggaga |
3332885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 42981823 - 42981900
Alignment:
| Q |
374 |
taatatgaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
451 |
Q |
| |
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||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| | |||||||| |
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|
| T |
42981823 |
taatacgaaaaggaccaatttcttcagaagcaccataagcaatagaagaacaaccaggaccaccattaagccataaaa |
42981900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 451
Target Start/End: Original strand, 42975932 - 42976003
Alignment:
| Q |
380 |
gaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
451 |
Q |
| |
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|||||||||||||||| || | ||||||||||||| || |||||||||||||||||||| | |||||||| |
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|
| T |
42975932 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaa |
42976003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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