View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_high_1 (Length: 761)
Name: NF17197_high_1
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 4327285 - 4327690
Alignment:
| Q |
13 |
atgaagagcaaggatttgatggttcagtctttccttagttaataccaattttctcaccaacaactcaaagcccaagttgttcttatgttatgcatcatag |
112 |
Q |
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| T |
4327285 |
atgaagagcaaggatttgatggttcagtctttccttagttaataccaattttctcaccaacaactcaaagcccaagttgttcttatgttatgcatcatag |
4327384 |
T |
|
| Q |
113 |
ttttaatcattatttcaatgcttgtcaatattttgagctcacatgtgattgtaatgagtttcttggtttaaatgtaaaccagagccaacatcaacatgat |
212 |
Q |
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| T |
4327385 |
ttttaatcattatttcaatgcttgtcaatattttgatctcacatgtgattgtaatgagtttcttggtttaaatgtaaaccagagccaacatcaacatgat |
4327484 |
T |
|
| Q |
213 |
tccctattaatggatgagtacatacactccatcttaggagctcccagtaaatactctaacaactcggataggcggcctaattttgaatcaaaatatcatc |
312 |
Q |
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| T |
4327485 |
tccctattaatggatgagtaaatacactccatcttaggagctaccagtaaatcaactaaaaactcggataggcggcctaattttgaatcaaaatatcatc |
4327584 |
T |
|
| Q |
313 |
aatttgatttaaatgaagatttcaatcacaactgttatactgcttttagaggcacaggctttagtgaggaggatattgttccttatatacctagctatct |
412 |
Q |
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| T |
4327585 |
aatttgatttaaatgaagatttcaatcacaactgttatactgcttttagaggcacaggctttagtgaggaggatgttgttccttatatacctagctatct |
4327684 |
T |
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| Q |
413 |
accaag |
418 |
Q |
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| T |
4327685 |
accaag |
4327690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 486 - 564
Target Start/End: Original strand, 4327687 - 4327765
Alignment:
| Q |
486 |
caaggattggacttgtgtcaagactattgcagtagttttcatgcttctctagctttaaatgaaggacaaccaggcatag |
564 |
Q |
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| T |
4327687 |
caaggattggacttgtgtcaagactattgcagtagttttcatgcttctctagctttaaatgaaggacaaccaggcatag |
4327765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 376 - 708
Target Start/End: Complemental strand, 34727542 - 34727210
Alignment:
| Q |
376 |
gtgaggaggatattgttccttatatacctagctatctaccaagcatatgtcctcctccttctgctttcctaggctcaaaatgtgcactttgggactgttc |
475 |
Q |
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| T |
34727542 |
gtgaggaggatgctgttcctcttatatctagctatctaccaagtgtatgccctcctccttctgctttcttgggcccaaaatgtgcactttgggactgtcc |
34727443 |
T |
|
| Q |
476 |
atggcccgcgcaaggattggacttgtgtcaagactattgcagtagttttcatgcttctctagctttaaatgaaggacaaccaggcatagccccagttcta |
575 |
Q |
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| T |
34727442 |
aagacccgcacaagggttggactggtgtcaagactattgtagtagctttcatgccgctctagctttgaatgaagggccaccaggcatggccccagttcta |
34727343 |
T |
|
| Q |
576 |
cgacctggggcaatcgaagttaaggataatttactgctagctgctcttagtgcaaagacagaaggaaaatatgtcggcatcccagaatgtgagggagcgg |
675 |
Q |
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||||| |||| || | | |||||||| ||||| | ||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||| | |
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| T |
34727342 |
cgacccgggggcattggtttaaaggataacttacttttttctgctcttagtgcaaaggcacaaggaaaagatgttggcatcccagaatgtgagggagcag |
34727243 |
T |
|
| Q |
676 |
caactgcaaagtctccgtggaacacacctggta |
708 |
Q |
| |
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|||||||||||||||| ||||| ||||||||| |
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| T |
34727242 |
caactgcaaagtctccatggaatgcacctggta |
34727210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 474
Target Start/End: Original strand, 30591836 - 30591884
Alignment:
| Q |
426 |
cctcctccttctgctttcctaggctcaaaatgtgcactttgggactgtt |
474 |
Q |
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||||| |||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
30591836 |
cctccaccttctgctttcctagccccaaaatgtgcactgtgggactgtt |
30591884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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