View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17197_high_3 (Length: 424)

Name: NF17197_high_3
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17197_high_3
NF17197_high_3
[»] chr5 (3 HSPs)
chr5 (141-422)||(32026378-32026659)
chr5 (2-142)||(32026186-32026329)
chr5 (347-388)||(41484312-41484353)
[»] chr1 (3 HSPs)
chr1 (141-399)||(29451510-29451762)
chr1 (278-381)||(35306231-35306335)
chr1 (345-410)||(16300175-16300240)
[»] chr4 (3 HSPs)
chr4 (316-383)||(26829389-26829457)
chr4 (329-383)||(34494467-34494522)
chr4 (346-382)||(12567036-12567072)
[»] chr2 (4 HSPs)
chr2 (278-382)||(7444446-7444549)
chr2 (345-383)||(13016794-13016832)
chr2 (345-383)||(33406638-33406676)
chr2 (272-382)||(8856010-8856122)
[»] chr3 (2 HSPs)
chr3 (278-404)||(35231224-35231351)
chr3 (353-413)||(25909546-25909606)
[»] chr7 (1 HSPs)
chr7 (280-383)||(23416343-23416447)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 141 - 422
Target Start/End: Original strand, 32026378 - 32026659
Alignment:
Q  141 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  32026378 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgtttttttggtacaatagttatgtgttttctaatcattttaatagaatataa 32026477  T
Q  241 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatga 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32026478 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaataatga 32026577  T
Q  341 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcct 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026578 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcct 32026659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 32026186 - 32026329
Alignment:
Q  2 ataaaatttatcaatcgtaaaaacataacagttctcgtagtgattaattacttgctcgcgttattttttatttaaagaaaatagcttgctgcactttttg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  32026186 ataaaatttatcaatcgtaaaagcataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgcacttttt- 32026284  T
Q  102 ttggtca----tcattaactttttaatacctgttattaataatta 142  Q
    |||||||    |  |  ||||||||||||||||||||||||||||    
T  32026285 ttggtcaagcttgctgcactttttaatacctgttattaataatta 32026329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 41484312 - 41484353
Alignment:
Q  347 aatttgttccgctccatcataaaatatccaaacaatgaaatg 388  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  41484312 aatttgttccgttccatcgtaaaatatccaaacaatgaaatg 41484353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 141 - 399
Target Start/End: Original strand, 29451510 - 29451762
Alignment:
Q  141 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 240  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||         ||||||| |||| |||||||||||||||| || | |||||||    
T  29451510 tatagctttagaaaatgtaacttcaaccacttgttattataattatatgtttttct--tacaataattatatgttttctaatcatttaaaaaaaatataa 29451607  T
Q  241 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-g 339  Q
    |||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||     |||| |||||||| ||| |    
T  29451608 atgctttgattttatataatagtattttaaattaaagaaaggtaaaattggaataaaaaatttatgactcagttca-----tcaacaatccaaataatgg 29451702  T
Q  340 aaacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctatt 399  Q
    ||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||    
T  29451703 aatgataaatttgttccgctgaatcataaaatatccaaacaatggaatgagctatttatt 29451762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 35306335 - 35306231
Alignment:
Q  278 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 376  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||||||| ||| |||    
T  35306335 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcataatataccca 35306236  T
Q  377 aacaa 381  Q
    |||||    
T  35306235 aacaa 35306231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 16300240 - 16300175
Alignment:
Q  345 taaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattc 410  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||   || |||| ||||||||||||    
T  16300240 taaatttattccgctccatcatataatatccaaacaatggaattgactgtctactccatttcattc 16300175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 26829389 - 26829457
Alignment:
Q  316 attccgtcaataatccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 383  Q
    ||||||| |||  ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  26829389 attccgttaattttccaaacaatggaaaggtaaatttgttccgctccatcataaaatacccaaacaatg 26829457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 34494522 - 34494467
Alignment:
Q  329 tccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 383  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||  |||||||||    
T  34494522 tccaaacaatggaaaggtaaatttgttccgctccatcataaaatactcaaacaatg 34494467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 12567036 - 12567072
Alignment:
Q  346 aaatttgttccgctccatcataaaatatccaaacaat 382  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12567036 aaatctgttccgctccatcataaaatacccaaacaat 12567072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 382
Target Start/End: Complemental strand, 7444549 - 7444446
Alignment:
Q  278 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacataaatttgttccgctccatcataaaatatccaa 377  Q
    ||||||||| |||||||||||||||||| || | || | || |||||||  |||||||||||||  | ||||  |||||| ||||||||||| |||||||    
T  7444549 aagggtaaaattggaataaaaaatttataactcgttccgtttcgtcaatt-tccaaacaatgaataaaaaataagttccgttccatcataaagtatccaa 7444451  T
Q  378 acaat 382  Q
    |||||    
T  7444450 acaat 7444446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 13016794 - 13016832
Alignment:
Q  345 taaatttgttccgctccatcataaaatatccaaacaatg 383  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  13016794 taaatttgttccgctccatcataaaatactcaaacaatg 13016832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 33406676 - 33406638
Alignment:
Q  345 taaatttgttccgctccatcataaaatatccaaacaatg 383  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33406676 taaatatgttctgctccatcataaaatatccaaacaatg 33406638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 382
Target Start/End: Original strand, 8856010 - 8856122
Alignment:
Q  272 ttaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgt-caataatccaaacaatgaaacata-aatttgttccgctccatcataaa 369  Q
    ||||| |||||||||  || ||||||||| |||| || |||| |||||||| || |  ||||||||||| ||||   ||||||||||||||| ||||| |    
T  8856010 ttaaacaagggtaaaaatgaaataaaaaagttataacacattccattccgttcatttttccaaacaatggaacaagtaatttgttccgctccgtcatata 8856109  T
Q  370 atatccaaacaat 382  Q
    ||| |||||||||    
T  8856110 atacccaaacaat 8856122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 35231351 - 35231224
Alignment:
Q  278 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 376  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||| ||| ||| |||    
T  35231351 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcgtaatataccca 35231252  T
Q  377 aacaatgaaatgagctatctattccatt 404  Q
    ||||| | | ||| || |||||||||||    
T  35231251 aacaaaggagtgaactctctattccatt 35231224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 25909546 - 25909606
Alignment:
Q  353 ttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccat 413  Q
    ||||| |||||||||||||||||||||| || |||||  |||||||||||||  |||||||    
T  25909546 ttccgttccatcataaaatatccaaacagtggaatgaaatatctattccattcgattccat 25909606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 23416447 - 23416343
Alignment:
Q  280 gggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacata-aatttgttccgctccatcataaaatatccaaa 378  Q
    |||||||  ||||||||||||||||| || |||| ||||||||  ||  ||||||||||| || |   |||||||||||||||||  || |||| |||||    
T  23416447 gggtaaaaatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaa 23416348  T
Q  379 caatg 383  Q
    |||||    
T  23416347 caatg 23416343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University