View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_high_8 (Length: 257)
Name: NF17197_high_8
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 7445650 - 7445878
Alignment:
| Q |
8 |
caacacagaagctaagacgagacgcaacacttgacccctattataaatacatatagaagccttaacgttgtctccaaaaaacaaggataacacatctcaa |
107 |
Q |
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| T |
7445650 |
caacacaaaagctaagacgagacgcaacacttgacccctattataaatacatatagaagccttaacgttgtctccaaaaaacaaggataacacatctcaa |
7445749 |
T |
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| Q |
108 |
tctcattactcattcttttaattaggatagcaagtgagtgttattagaaacaaagagagattgagacagttagtaacaaaagacacaaaaatataacaat |
207 |
Q |
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| T |
7445750 |
tctcattactcattcttttaattaggatagcaagtgagtgttattagaaacaaagagagattgagacagttagtaacaaaagacacaaaaatataacaat |
7445849 |
T |
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| Q |
208 |
gaatcatcatcaagaccaaatgatgcttatgt |
239 |
Q |
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| T |
7445850 |
ga---atcatcaagaccaaatgatgcttatgt |
7445878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 7460715 - 7460822
Alignment:
| Q |
129 |
ttaggatagcaagtgagtgttattagaaacaaagagagattgagacagttagtaacaaaagacacaaaaatataacaatgaatcatcatcaagaccaaat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7460715 |
ttaggatagcaagtgagtgttattagaaacaaagagagattgagacagttagtaacaaaagacacaaaaatataacaatga---atcatcaagaccaaat |
7460811 |
T |
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| Q |
229 |
gatgcttatgt |
239 |
Q |
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| T |
7460812 |
gatgcttatgt |
7460822 |
T |
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