View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17197_low_12 (Length: 219)

Name: NF17197_low_12
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17197_low_12
NF17197_low_12
[»] chr1 (2 HSPs)
chr1 (13-199)||(46174523-46174709)
chr1 (71-167)||(5366293-5366389)
[»] chr3 (2 HSPs)
chr3 (95-198)||(32639190-32639293)
chr3 (76-199)||(40155297-40155420)
[»] chr7 (2 HSPs)
chr7 (98-199)||(134215-134316)
chr7 (99-167)||(38597150-38597218)
[»] chr2 (1 HSPs)
chr2 (98-175)||(29537002-29537079)
[»] chr4 (1 HSPs)
chr4 (94-167)||(10093546-10093619)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 46174709 - 46174523
Alignment:
Q  13 caaagggaatgtaaaattaaatcatacacatatacggtgcaccatagaaaacattgagaaagtatttagccactacatgtgataatcaaaagtaaggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||| |||||||||||| ||||||||    
T  46174709 caaagagaatgtaaaattaaatcatacacatatacggtacaccatagaaaacactgagaaaggatttagccaccacatttgataatcaaaaataaggtta 46174610  T
Q  113 ttgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagtcgtggatattttcatttgtattcttcaagatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46174609 ttgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagtcgtggatattttcatttgtattcttgaagatt 46174523  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 5366293 - 5366389
Alignment:
Q  71 aaagtatttagccactacatgtgataatcaaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagt 167  Q
    |||| ||| |||||| ||||||| || ||||||| || |||||||| ||||| |||||| |||| |||| ||||||||||| ||||||||| |||||    
T  5366293 aaaggattgagccaccacatgtgctagtcaaaagcaaagttattgtatttcgttttcaatcatccaaaatattgtgcatttgtgttgtcaaacaagt 5366389  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 32639190 - 32639293
Alignment:
Q  95 taatcaaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagtcgtggatattttcatttgtattcttca 194  Q
    |||||||||| ||| || |||| ||| ||||||||||||| |||||||||||  ||||||||||| ||||||| ||| ||||| |||||| ||| ||| |    
T  32639190 taatcaaaagcaagattgttgtattttgctttcaaccatccaaaaaattgtgtttttatgttgtcgagcaagtggtgtatattatcatttttatgcttga 32639289  T
Q  195 agat 198  Q
    ||||    
T  32639290 agat 32639293  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 40155297 - 40155420
Alignment:
Q  76 atttagccactacatgtgataatcaaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagtcgtggata 175  Q
    |||||||||| | |||||||  ||| | | ||| ||||||| |||| ||||||||||   |||| |||| || ||||||||||| ||||||| |||||||    
T  40155297 atttagccaccatatgtgattgtcagacgcaagattattgtatttcactttcaaccaatcaaaagattgcgcttttatgttgtcgagcaagtggtggata 40155396  T
Q  176 ttttcatttgtattcttcaagatt 199  Q
    || |||||| ||||||| ||||||    
T  40155397 ttatcatttttattcttgaagatt 40155420  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 134316 - 134215
Alignment:
Q  98 tcaaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagtcgtggatattttcatttgtattcttcaaga 197  Q
    ||||||| ||| || ||||| |||||||||||||| | |||| |||| || || |||||||||||||||| ||| ||| | | ||||| |||||| ||||    
T  134316 tcaaaagcaagatttttgtgcttcgctttcaaccaaccaaaatattgagccttaatgttgtcaagcaagtggtgaatagtattatttgaattcttgaaga 134217  T
Q  198 tt 199  Q
    ||    
T  134216 tt 134215  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 38597218 - 38597150
Alignment:
Q  99 caaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagt 167  Q
    |||||| ||| || ||||| |||||||||||||| | |||| |||| || || ||||||||||||||||    
T  38597218 caaaagcaagatttttgtgcttcgctttcaaccaaccaaaagattgagccttaatgttgtcaagcaagt 38597150  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 29537002 - 29537079
Alignment:
Q  98 tcaaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagtcgtggata 175  Q
    ||||||| ||| || | ||| |||||||||||||| | |||| ||||||| ||||||||||||| ||||| |||||||    
T  29537002 tcaaaagcaagattttcgtgcttcgctttcaaccaaccaaaagattgtgcttttatgttgtcaaacaagtagtggata 29537079  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 10093619 - 10093546
Alignment:
Q  94 ataatcaaaagtaaggttattgtgtttcgctttcaaccatctaaaaaattgtgcatttatgttgtcaagcaagt 167  Q
    ||||||||||||||| ||  |||||||| |||||||||| ||| || |||| || || |||||||||| |||||    
T  10093619 ataatcaaaagtaagatttctgtgtttcactttcaaccaactagaagattgagccttgatgttgtcaaacaagt 10093546  T

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