View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_low_13 (Length: 216)
Name: NF17197_low_13
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 9832024 - 9832207
Alignment:
| Q |
17 |
aactagtcctcttggtccaggcgttggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgcc |
116 |
Q |
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| T |
9832024 |
aactagtgctcttggtccatgcattggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgcc |
9832123 |
T |
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| Q |
117 |
accacacctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaatacagctgcagcttct |
200 |
Q |
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| T |
9832124 |
accacacctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaatacagctgcagcttct |
9832207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 9812553 - 9812370
Alignment:
| Q |
17 |
aactagtcctcttggtccaggcgttggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgcc |
116 |
Q |
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| T |
9812553 |
aactagtgctcttggtccatgcattggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgcc |
9812454 |
T |
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| Q |
117 |
accacacctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaatacagctgcagcttct |
200 |
Q |
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| T |
9812453 |
accacacctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaataccgctgcagcttct |
9812370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 9786643 - 9786483
Alignment:
| Q |
25 |
ctcttggtccaggcgttggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgccaccacacc |
124 |
Q |
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| T |
9786643 |
ctcttgctccatgcattggatatcttaaaggtggttctggtccatctgcagcatgctgtggtggagtcaagagacttaacagtgccgccactaccacgcc |
9786544 |
T |
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| Q |
125 |
tgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaat |
185 |
Q |
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| T |
9786543 |
tgaccgtcaggctgcttgcaactgcttgaaaagtgctgctggtgctatttctggtttgaat |
9786483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 10150787 - 10150719
Alignment:
| Q |
45 |
tatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgcc |
113 |
Q |
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| T |
10150787 |
tatcttcaaggtggtcctggtccatctgcagcatgctgtggtggagtgaagaaacttaacggtgccgcc |
10150719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 10137301 - 10137191
Alignment:
| Q |
45 |
tatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgccaccacacctgaccgtcaggctgcatgca |
144 |
Q |
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| T |
10137301 |
tatcttcaaggtggtcctggtccatctgcagcatgctgtggtggagtgaagaaacttaatgctgccgccaacaccggccctgcccgcaaggctgcttgca |
10137202 |
T |
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| Q |
145 |
actgcttgaaa |
155 |
Q |
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| T |
10137201 |
actgcttgaaa |
10137191 |
T |
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