View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_low_2 (Length: 600)
Name: NF17197_low_2
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Original strand, 4823567 - 4824075
Alignment:
| Q |
17 |
cacattgtgtgtcaaatatgttctcaaacaaggattagtcattgttaaactgtgttagaaagtgcagtgtgcaataaaattgatttgaagctttactagc |
116 |
Q |
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| T |
4823567 |
cacattgtgtgtcaaatatgttctcaaacaaggattagtcattgttaaactgtgttagaaagtgcagtgtgcaataaaattgatttgaagctttactagc |
4823666 |
T |
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| Q |
117 |
atatatctttttcatttgtatatgtgattcaccccaatttacaatataaaagcattattagcatatagaaaaagtttattattatgacaatgaagcaaaa |
216 |
Q |
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| T |
4823667 |
atatatctttttcatttgtatatgtgattcaccccaatttacaatataaaagcattattagcatatagaaaaagtttattattatgacaatgaagcaaaa |
4823766 |
T |
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| Q |
217 |
tattgattggtgagtgactattcaggtcaatgacagcaacttcaaagctgtataatggaggctacagaaatcttggatggttagttggaggctttagtcg |
316 |
Q |
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| T |
4823767 |
tattgattggtgagtgactattcaggtcaatgacagcaacttcaaagctgtataatggaggttacagaaatcttggatggttagttggaggctttagtcg |
4823866 |
T |
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| Q |
317 |
ttcaaaagacgatgatttctcagacgttgaaggaaaagagaagttgaagtatgctacaattggaggagcctcttactacttccttcagttgctcatacta |
416 |
Q |
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| T |
4823867 |
ttcaaaagacgatgatttctcagacgttgaaggaaaagagaagttgaagtatgctacaattggaggagcctcttactacttccttcagttgctcatacta |
4823966 |
T |
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| Q |
417 |
ctccaaactgtgagtaaatagtcatctggtctttaaatatgtgagatagcgtcattatagtctttgaatgaatcgaaacttaaacattcctaagtgtgtt |
516 |
Q |
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| T |
4823967 |
ctccaaactgtgagtaaatagtcatctggtccttaaatatgtgagatagcgtcattatagtctttgaatgaatcgaaacttaaacattcctaagtgtgtt |
4824066 |
T |
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| Q |
517 |
ttctggacc |
525 |
Q |
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| T |
4824067 |
ttctggacc |
4824075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 526 - 579
Target Start/End: Original strand, 4824363 - 4824416
Alignment:
| Q |
526 |
ttcctgtcagttacttatagaagtgagtaaacactccaaaattggtacattgaa |
579 |
Q |
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| T |
4824363 |
ttcctgtcagtttcttatagaagtgagtaaacactccaaaattggtacattgaa |
4824416 |
T |
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