View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17197_low_3 (Length: 456)

Name: NF17197_low_3
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17197_low_3
NF17197_low_3
[»] chr4 (24 HSPs)
chr4 (18-415)||(50061686-50062083)
chr4 (96-156)||(21691349-21691409)
chr4 (21-149)||(46344893-46345013)
chr4 (18-157)||(49138894-49139025)
chr4 (30-70)||(26617443-26617483)
chr4 (18-70)||(32818428-32818480)
chr4 (19-153)||(35064962-35065089)
chr4 (18-89)||(49138821-49138891)
chr4 (18-70)||(25319022-25319075)
chr4 (100-157)||(33456269-33456326)
chr4 (96-157)||(33843586-33843647)
chr4 (18-94)||(9064182-9064258)
chr4 (96-156)||(16551853-16551913)
chr4 (30-62)||(33843661-33843693)
chr4 (18-94)||(43868087-43868163)
chr4 (18-63)||(11271595-11271641)
chr4 (18-68)||(55187020-55187070)
chr4 (120-161)||(56013913-56013954)
chr4 (117-157)||(29728917-29728957)
chr4 (27-91)||(37353400-37353464)
chr4 (27-91)||(37365374-37365438)
chr4 (30-82)||(52061404-52061456)
chr4 (21-89)||(53913638-53913706)
chr4 (123-163)||(54705547-54705587)
[»] chr8 (12 HSPs)
chr8 (18-415)||(44141108-44141505)
chr8 (19-79)||(37684371-37684431)
chr8 (34-94)||(26668503-26668563)
chr8 (18-73)||(32927864-32927919)
chr8 (98-157)||(10367896-10367955)
chr8 (17-68)||(41318836-41318887)
chr8 (18-79)||(38868464-38868525)
chr8 (30-94)||(35525363-35525427)
chr8 (78-157)||(35494916-35494995)
chr8 (18-68)||(4662961-4663011)
chr8 (30-70)||(4950459-4950499)
chr8 (96-132)||(13384783-13384819)
[»] scaffold0168 (1 HSPs)
scaffold0168 (18-157)||(31721-31853)
[»] chr6 (16 HSPs)
chr6 (18-163)||(5724688-5724826)
chr6 (11-145)||(3481946-3482080)
chr6 (30-153)||(25195434-25195550)
chr6 (18-157)||(4910803-4910935)
chr6 (18-70)||(16540082-16540134)
chr6 (25-127)||(2008403-2008498)
chr6 (30-70)||(2234490-2234530)
chr6 (18-70)||(6654148-6654200)
chr6 (37-68)||(24974192-24974223)
chr6 (18-69)||(26280581-26280632)
chr6 (18-60)||(7952767-7952809)
chr6 (30-68)||(35098244-35098282)
chr6 (19-70)||(2234272-2234324)
chr6 (6-70)||(10400741-10400805)
chr6 (18-46)||(14993077-14993105)
chr6 (97-157)||(31710512-31710572)
[»] chr2 (13 HSPs)
chr2 (30-157)||(30503104-30503224)
chr2 (98-157)||(33047683-33047742)
chr2 (18-70)||(10644578-10644630)
chr2 (18-70)||(2002753-2002805)
chr2 (35-70)||(1976940-1976975)
chr2 (20-75)||(22535968-22536023)
chr2 (30-68)||(680347-680385)
chr2 (18-92)||(11504119-11504193)
chr2 (27-69)||(32777946-32777988)
chr2 (35-69)||(33502223-33502257)
chr2 (100-157)||(7629757-7629814)
chr2 (18-66)||(16518758-16518806)
chr2 (30-70)||(31453358-31453398)
[»] scaffold0314 (1 HSPs)
scaffold0314 (100-156)||(17322-17378)
[»] chr3 (13 HSPs)
chr3 (96-159)||(52141374-52141437)
chr3 (100-157)||(1290676-1290733)
chr3 (18-157)||(25359632-25359763)
chr3 (30-70)||(7717391-7717431)
chr3 (31-82)||(40736608-40736659)
chr3 (18-89)||(54596774-54596845)
chr3 (100-157)||(3845245-3845302)
chr3 (100-157)||(52363960-52364017)
chr3 (39-87)||(48410891-48410939)
chr3 (30-69)||(30301069-30301108)
chr3 (33-70)||(35058336-35058373)
chr3 (30-70)||(38022410-38022451)
chr3 (18-70)||(41115420-41115472)
[»] chr5 (17 HSPs)
chr5 (17-153)||(11647981-11648110)
chr5 (100-157)||(38845644-38845701)
chr5 (18-94)||(27374349-27374425)
chr5 (30-70)||(36639912-36639952)
chr5 (17-69)||(43268467-43268519)
chr5 (18-65)||(14299310-14299357)
chr5 (96-157)||(18851211-18851272)
chr5 (96-157)||(22226365-22226426)
chr5 (18-62)||(9818717-9818761)
chr5 (30-65)||(13171831-13171866)
chr5 (100-157)||(3043137-3043194)
chr5 (32-89)||(5468729-5468786)
chr5 (18-47)||(6951363-6951392)
chr5 (33-62)||(22572511-22572540)
chr5 (40-89)||(29922582-29922631)
chr5 (19-79)||(36290001-36290061)
chr5 (20-68)||(42858085-42858133)
[»] chr1 (11 HSPs)
chr1 (18-157)||(28083946-28084078)
chr1 (18-70)||(6021779-6021831)
chr1 (18-65)||(50571264-50571311)
chr1 (100-162)||(15478134-15478196)
chr1 (21-161)||(36780178-36780311)
chr1 (18-71)||(1514317-1514370)
chr1 (17-69)||(5268194-5268247)
chr1 (100-157)||(8130853-8130910)
chr1 (96-157)||(45660878-45660938)
chr1 (21-70)||(47053385-47053438)
chr1 (30-58)||(48549082-48549110)
[»] chr7 (9 HSPs)
chr7 (18-65)||(15903588-15903635)
chr7 (18-70)||(36270955-36271007)
chr7 (19-70)||(40422767-40422819)
chr7 (32-70)||(5489918-5489956)
chr7 (100-157)||(46325570-46325627)
chr7 (18-94)||(41386873-41386949)
chr7 (26-89)||(27571818-27571881)
chr7 (31-70)||(44856878-44856917)
chr7 (30-68)||(45004997-45005035)
[»] scaffold0197 (1 HSPs)
scaffold0197 (96-157)||(31544-31605)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 50061686 - 50062083
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061686 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 50061785  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaatacaagcaaacgggtaaaattgtcctaaaagtaaatcatcag 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061786 agaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaatacaagcaaacgggtaaaattgtcctaaaagtaaatcatcag 50061885  T
Q  218 taacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattagtattacaaagaaatccaaccttttga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50061886 taacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattagtattacaaagaaatccaaccttttca 50061985  T
Q  318 agcttatagcgaattctaacttctggattaggagaatacatcttttgttttgccttcaaacgatagaatctgagctcatttagcttggcctttcttga 415  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50061986 agcttatagcgaatcctaacttctggattaggagaatacatcttttgttttgccttcaaacgaaagaatctgagctcatttagcttggcctttcttga 50062083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 21691349 - 21691409
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacat 156  Q
    ||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||    
T  21691349 tcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacat 21691409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 46344893 - 46345013
Alignment:
Q  21 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctccaaa 120  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||| |||| || | ||| || |||||       ||||||| |||| || ||||||| |    
T  46344893 aaattctaacttcaagtagaat-aattatggaggcaaaatcaattatacttgaaagcaaccaaacatg-------tcagaattaattatacacctccata 46344984  T
Q  121 atcaattttggttcctctagaagtggaac 149  Q
    |||||||||||  ||||||||||||||||    
T  46344985 atcaattttgggccctctagaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 49138894 - 49139025
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||||||| |||||||||||| |||  ||| ||||| |||||||| |||| || ||||| || ||||||       |||||||||||||| |||||     
T  49138894 tacaaatcctatcttcaagtagaa-caagcttgcaggcacaatcaattttacttgaaaacaaccaaacatgt-------cagaatcaattctacacctct 49138985  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    | ||||||||||||   || ||||||||||||||||||||    
T  49138986 agaatcaattttggccactttagaagtggaaccaaacata 49139025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 26617483 - 26617443
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  26617483 cttcaagtagaatcatttttggaggcaaaatcaattctact 26617443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 32818428 - 32818480
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||    
T  32818428 tacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattctact 32818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 35065089 - 35064962
Alignment:
Q  19 acaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcca 118  Q
    |||||| ||| ||||||||| |||||||| | |||||||||||||||||||| || | ||| || | |||       ||| ||||||||||| |||||||    
T  35065089 acaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatg-------tcataatcaattctacacctcca 35064997  T
Q  119 aaatcaattttggttcctctagaagtggaaccaaa 153  Q
     |||||||||||   |||| |||||||||||||||    
T  35064996 taatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 49138821 - 49138891
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgt 89  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||||| |||| || ||||| || ||||||    
T  49138821 tacaaatcctagcttcaagtagaat-aagtttggaggcaaaatcaattttacttgaaaacaaccaaacatgt 49138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 25319075 - 25319022
Alignment:
Q  18 tacaaatcctaacttcaagt-agaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||| |||||||| |||||||||| ||||| ||||||||||||||||    
T  25319075 tacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattctact 25319022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 33456326 - 33456269
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| || | ||||||||||| | || ||||||||||||||||||||||||    
T  33456326 aatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaacata 33456269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 33843647 - 33843586
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||| ||||||| ||||| | ||||||||||||  |||||||||||| |||||||||||    
T  33843647 tcagaattaattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacata 33843586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9064258 - 9064182
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 94  Q
    ||||||| |||  ||||||||||||||||| ||| |||||| | ||||||| | |||||||| || |||||||||||    
T  9064258 tacaaattctagtttcaagtagaatcaattatggtggcaaatttaattctattcgacaacaaccaaacatgttagaa 9064182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 16551913 - 16551853
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacat 156  Q
    ||||||||||||||| ||||| ||||||||||||| |  ||||  ||||||||||||||||    
T  16551913 tcagaatcaattctacacctctaaaatcaattttgatctctctgaaagtggaaccaaacat 16551853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 33843693 - 33843661
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatca 62  Q
    |||||||||||||||||||||||||||||||||    
T  33843693 cttcaagtagaatcaattttggaggcaaaatca 33843661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 43868163 - 43868087
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 94  Q
    |||||||| ||| ||||| ||||||||||| ||||| |||||| ||||||||| || | ||| || |||||||||||    
T  43868163 tacaaatcttaatttcaaatagaatcaattgtggagacaaaattaattctactagaaagcaaccaaacatgttagaa 43868087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 11271595 - 11271641
Alignment:
Q  18 tacaaatcctaacttcaagt-agaatcaattttggaggcaaaatcaa 63  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||    
T  11271595 tacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 55187020 - 55187070
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    |||||||||||||||||||||||||||||| || ||| | ||| |||||||    
T  55187020 tacaaatcctaacttcaagtagaatcaattctgaaggtagaattaattcta 55187070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 56013913 - 56013954
Alignment:
Q  120 aatcaattttggttcctctagaagtggaaccaaacatataca 161  Q
    |||||||| |||||| |||||||| |||||||||||||||||    
T  56013913 aatcaattatggttcttctagaagaggaaccaaacatataca 56013954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 29728957 - 29728917
Alignment:
Q  117 caaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||||||| ||||||| |||||||||||| ||||    
T  29728957 caaaatcaattttggatcctctaaaagtggaaccaatcata 29728917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 37353464 - 37353400
Alignment:
Q  27 taacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgtta 91  Q
    |||||| ||| |||||||||||| ||| |||| ||||||||||| || ||||| || ||||||||    
T  37353464 taactttaagcagaatcaattttagagacaaagtcaattctactcgaaaacaagcaaacatgtta 37353400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 37365438 - 37365374
Alignment:
Q  27 taacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgtta 91  Q
    |||||| ||| |||||||||||| ||| |||| ||||||||||| || ||||| || ||||||||    
T  37365438 taactttaagcagaatcaattttagagacaaagtcaattctactcgaaaacaagcaaacatgtta 37365374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 52061456 - 52061404
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatca 82  Q
    |||||||||||||||||| | | | ||||||||||||||||  ||||||||||    
T  52061456 cttcaagtagaatcaattctagggccaaaatcaattctactcaacaacaatca 52061404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 53913638 - 53913706
Alignment:
Q  21 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgt 89  Q
    ||||| || ||| ||||| |||||||| |  ||||||||||||||||||| |||||||| || ||||||    
T  53913638 aaatcatatctttaagtaaaatcaattataaaggcaaaatcaattctactcgacaacaaacaaacatgt 53913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 54705547 - 54705587
Alignment:
Q  123 caattttggttcctctagaagtggaaccaaacatatacaaa 163  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  54705547 caattttggcccctctagaagtggaaccaaacatacacaaa 54705587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 44141108 - 44141505
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141108 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 44141207  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaatacaagcaaacgggtaaaattgtcctaaaagtaaatcatcag 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  44141208 agaatcaattttggttcctctagaagtggaaccaaacatatacaaagtcgtacaagaatacaagctaacgggtaaaattgtcctataagtaaatcatcag 44141307  T
Q  218 taacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattagtattacaaagaaatccaaccttttga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44141308 taacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattagtattacaaagaaatccaaccttttca 44141407  T
Q  318 agcttatagcgaattctaacttctggattaggagaatacatcttttgttttgccttcaaacgatagaatctgagctcatttagcttggcctttcttga 415  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44141408 agcttatagcgaatcctaacttctggattaggagaatacatcttttgttttgccttcaaacgaaagaatctgagctcatttagcttggcctttcttga 44141505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37684431 - 37684371
Alignment:
Q  19 acaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaa 79  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||||||    
T  37684431 acaaatcctaacttcaagtagaatcaattctggagacaaaatcaattctactccacaacaa 37684371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 26668563 - 26668503
Alignment:
Q  34 aagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 94  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  26668563 aagtagaatcaattatggaggcagaatcaattctactcgacaagaatcaaacatgttagaa 26668503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 32927919 - 32927864
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactgga 73  Q
    ||||||||||| |||||||||||||||| | | |||||||||||||||||||||||    
T  32927919 tacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctactgga 32927864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 10367955 - 10367896
Alignment:
Q  98 agaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||||| | ||||| ||||||||||||  ||||||||||| ||||||||||||    
T  10367955 agaatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacata 10367896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 41318836 - 41318887
Alignment:
Q  17 gtacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    |||||||| ||||||||||||||||||||||||  ||||||||| |||||||    
T  41318836 gtacaaattctaacttcaagtagaatcaattttaaaggcaaaataaattcta 41318887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 38868525 - 38868464
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaa 79  Q
    |||||||| || |||||||||||||||||||| ||||||  ||||||| |||| ||||||||    
T  38868525 tacaaatcttagcttcaagtagaatcaattttagaggcatcatcaattttactcgacaacaa 38868464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 35525427 - 35525363
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 94  Q
    ||||||||| |||||||| ||| || | ||||||||||||| ||||||||||| |||||| ||||    
T  35525427 cttcaagtacaatcaattctggtggtagaatcaattctactcgacaacaatcaaacatgtcagaa 35525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 35494995 - 35494916
Alignment:
Q  78 aatcagacatgttagaactcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||| ||||||||||||| |||||||||| |  ||||||| |||||||  |||  ||| |||||||||| |||||||||    
T  35494995 aatcaaacatgttagaactaagaatcaattgtgcacctccagaatcaatcatggcccctttagaagtggacccaaacata 35494916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4662961 - 4663011
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    ||||||||||| ||||||||||||| ||||  ||| |||||||||||||||    
T  4662961 tacaaatcctagcttcaagtagaataaattccggatgcaaaatcaattcta 4663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 4950499 - 4950459
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  4950499 cttcaagtctaatcaatttttgaggcaaaatcaattctact 4950459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 13384783 - 13384819
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggt 132  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  13384783 tcagaatcaattctacacctccaaaatcaattatggt 13384819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 31853 - 31721
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||| |||| |||||||| || |||||       ||||||||||||||| |||||     
T  31853 tacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatg-------tcagaatcaattctacacctct 31761  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    | |||||||||||||  |||||||||||||||||||||||    
T  31760 agaatcaattttggtcactctagaagtggaaccaaacata 31721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 5724688 - 5724826
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||  || | ||  || |||||       ||||||||||||||| || ||     
T  5724688 tacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatg-------tcagaatcaattctacacttct 5724780  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacatatacaaa 163  Q
    | ||| ||||||||  |||||||||||||||||||||||| |||||    
T  5724781 agaattaattttggcccctctagaagtggaaccaaacatacacaaa 5724826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 3482080 - 3481946
Alignment:
Q  11 caaagggtacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattcta 110  Q
    |||||| |||||||| |||||||||||| |||||||| |  || || ||||||||||||  ||||||||||| |||||| | ||||||||||||||||||    
T  3482080 caaaggctacaaatcttaacttcaagtataatcaattctaaagacagaatcaattctacctgacaacaatcaaacatgtcataactcagaatcaattcta 3481981  T
Q  111 gacctccaaaatcaattttggttcctctagaagtg 145  Q
     || | || |||||||| || | |||||| |||||    
T  3481980 cacatacataatcaattatgatccctctaaaagtg 3481946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 25195434 - 25195550
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctccaaaatcaatttt 129  Q
    ||||||||||||||||||  ||||||| |||||||| |||| || | ||| || ||||||       ||||||||||| || || |||| ||||||||||    
T  25195434 cttcaagtagaatcaattccggaggcagaatcaattatactcgatagcaaccaaacatgt-------cagaatcaattatacacatccagaatcaatttt 25195526  T
Q  130 ggttcctctagaagtggaaccaaa 153  Q
    ||||||||||||||||||||||||    
T  25195527 ggttcctctagaagtggaaccaaa 25195550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 4910935 - 4910803
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    |||||||| || |||||||||||||||||||| |||||| ||||||||||| | ||| |||| || |||||       ||||||||||||||| || | |    
T  4910935 tacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaattctaattgacgacaaccaaacatg-------tcagaatcaattctacacattc 4910843  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    | |||||||| | ||  ||||| |||||||||||||||||    
T  4910842 agaatcaattatagtctctctaaaagtggaaccaaacata 4910803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 16540134 - 16540082
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||| ||||    
T  16540134 tacaaatcctagcttcaagtagaatcaattttggagacagaatcaattttact 16540082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 2008403 - 2008498
Alignment:
Q  25 cctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctccaaaatca 124  Q
    |||| |||||||||||||  ||| ||||| |||||| ||||||||| || |||||||| |||||       |||||| |||||||| |||||||||||||    
T  2008403 cctagcttcaagtagaattgattatggagacaaaatgaattctactcgaaaacaatcaaacatg-------tcagaaacaattctacacctccaaaatca 2008495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 2234530 - 2234490
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  2234530 cttcaagttgaatcaattttgaaggcaaaatcaattctact 2234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 6654148 - 6654200
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||| ||||||||||||| |||| || ||| |||||||||||||||    
T  6654148 tacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattctact 6654200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 24974223 - 24974192
Alignment:
Q  37 tagaatcaattttggaggcaaaatcaattcta 68  Q
    ||||||||||||||||||||||||||||||||    
T  24974223 tagaatcaattttggaggcaaaatcaattcta 24974192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 26280632 - 26280581
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctac 69  Q
    ||||||| ||| |||||||| ||||||||| | |||||||||||||||||||    
T  26280632 tacaaattctagcttcaagtggaatcaattcttgaggcaaaatcaattctac 26280581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 7952767 - 7952809
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaat 60  Q
    ||||||||||  ||||||||||||| |||||||||||||||||    
T  7952767 tacaaatcctcgcttcaagtagaataaattttggaggcaaaat 7952809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 35098244 - 35098282
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  35098244 cttcaattagaatcaattttgtaggcaaaatcaattcta 35098282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 2234272 - 2234324
Alignment:
Q  19 acaaatcctaacttcaagt-agaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||| |||||||| || ||||||||||  |||||||||||||||||||||    
T  2234272 acaaatcttaacttcatgttagaatcaattcaggaggcaaaatcaattctact 2234324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 10400741 - 10400805
Alignment:
Q  6 agaagcaaagggtacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||| |||||| || ||||||||||||||| |||||| |||| | | ||||||| ||||||||||    
T  10400741 agaatcaaaggctagaaatcctaacttcaactagaattaattctagtggcaaaaacaattctact 10400805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 14993105 - 14993077
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaat 46  Q
    |||||||||||||||||||||||||||||    
T  14993105 tacaaatcctaacttcaagtagaatcaat 14993077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 31710512 - 31710572
Alignment:
Q  97 cagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    |||||||||||||| || |||| |||||||| ||||  ||||| ||| |||||||||||||    
T  31710512 cagaatcaattctacacatccacaatcaattatggtctctctaaaagaggaaccaaacata 31710572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 30503224 - 30503104
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctccaaaatcaatttt 129  Q
    ||||||||||||||||||||||||||||||||| |||| || || | |||||  |||||||       ||||||||||||| || |||||||||||||||    
T  30503224 cttcaagtagaatcaattttggaggcaaaatcatttcttcttgaaatcaatcgaacatgtt-------agaatcaattctacacttccaaaatcaatttt 30503132  T
Q  130 ggttcctctagaagtggaaccaaacata 157  Q
    |   ||| ||||||||||||||| ||||    
T  30503131 gacccctttagaagtggaaccaagcata 30503104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 33047683 - 33047742
Alignment:
Q  98 agaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||    
T  33047683 agaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacata 33047742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 10644630 - 10644578
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||||||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  10644630 tacaaatcttaacttcaagtagaataaattttggaggcagaatcaattctact 10644578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 2002753 - 2002805
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||| |||||||||||||||  | ||||||||||||||||||||||    
T  2002753 tacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattctact 2002805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 1976940 - 1976975
Alignment:
Q  35 agtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1976940 agtagaatcaattttggagacaaaatcaattctact 1976975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 22536023 - 22535968
Alignment:
Q  20 caaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggaca 75  Q
    ||||| |||| ||||||||||||||||| |  ||||||||||||||||||| ||||    
T  22536023 caaattctaaattcaagtagaatcaattctaaaggcaaaatcaattctacttgaca 22535968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 680347 - 680385
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  680347 cttcaagtagaatcaattctggaggcaaaatcagttcta 680385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 11504119 - 11504193
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttag 92  Q
    |||||||||||||||   ||||||||||||||||||| | ||||| || ||||  ||||| |||| |||||||||    
T  11504119 tacaaatcctaactttcggtagaatcaattttggaggtagaatcagttatactcaacaactatcaaacatgttag 11504193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 32777988 - 32777946
Alignment:
Q  27 taacttcaagtagaatcaattttggaggcaaaatcaattctac 69  Q
    ||||||||||| |||| |||| |||||||||||||||||||||    
T  32777988 taacttcaagttgaataaattatggaggcaaaatcaattctac 32777946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 33502257 - 33502223
Alignment:
Q  35 agtagaatcaattttggaggcaaaatcaattctac 69  Q
    ||||||||||||| |||||||||||||||||||||    
T  33502257 agtagaatcaattctggaggcaaaatcaattctac 33502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 7629814 - 7629757
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| ||||| | ||||||| |||| ||||| | |||||||||||||||||    
T  7629814 aatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacata 7629757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 16518806 - 16518758
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattc 66  Q
    ||||||||||| |||| ||||||||||||| |||| |||||| ||||||    
T  16518806 tacaaatcctatcttctagtagaatcaattctggaagcaaaaccaattc 16518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 31453398 - 31453358
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  31453398 cttcaagtagaatcaattatagaggcaaaataaattctact 31453358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 17378 - 17322
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacat 156  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||    
T  17378 aatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaacat 17322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 52141374 - 52141437
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatata 159  Q
    |||||||| |||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  52141374 tcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaacatata 52141437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 1290733 - 1290676
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||    
T  1290733 aatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaacata 1290676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 25359632 - 25359763
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||| || | |||| ||| || ||||| |       |||| |||||||| ||||||    
T  25359632 tacaaattctaacttcaagtagaatcaattctggaggcagaatcaatt-tatttgacagcaaccaaacatggt-------agaagcaattctatacctcc 25359723  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    | |||||||| |||   ||||| |||||||||||||||||    
T  25359724 ataatcaattctggccactctaaaagtggaaccaaacata 25359763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 7717391 - 7717431
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  7717391 cttcaagtagaatcaattctggaggcaaaatcaattctact 7717431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 40736608 - 40736659
Alignment:
Q  31 ttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatca 82  Q
    |||||||||||||||||| ||| |||||||||||| |||| |||||||||||    
T  40736608 ttcaagtagaatcaatttcggatgcaaaatcaattttactcgacaacaatca 40736659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 54596845 - 54596774
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgt 89  Q
    ||||||| |||||||||| || ||||| ||||||||||| ||||||||||||| || ||||| || ||||||    
T  54596845 tacaaattctaacttcaaataaaatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgt 54596774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 3845245 - 3845302
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| ||||| | |||||||||||||| ||| | |||||||||||||||||    
T  3845245 aatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacata 3845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 52364017 - 52363960
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    |||||||| || ||||| | ||||||||||||| |||||| |||||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacata 52363960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 48410891 - 48410939
Alignment:
Q  39 gaatcaattttggaggcaaaatcaattctactggacaacaatcagacat 87  Q
    |||||||||||||||||||||||||||||||| || | |||||| ||||    
T  48410891 gaatcaattttggaggcaaaatcaattctactcgaaagcaatcaaacat 48410939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 30301069 - 30301108
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctac 69  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  30301069 cttcaaatagagtcaattttggaggcaaaatcaattctac 30301108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 35058373 - 35058336
Alignment:
Q  33 caagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  35058373 caagtagaatcaattcttgaggcaaaatcaattctact 35058336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 38022451 - 38022410
Alignment:
Q  30 cttcaagtagaatcaattttggaggc-aaaatcaattctact 70  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  38022451 cttcaggtagaatcaattttggaggcaaaaatcaattctact 38022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 41115420 - 41115472
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||| ||| |||||||||||||||||| |  | |||||||||||||||||    
T  41115420 tacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctact 41115472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 11648110 - 11647981
Alignment:
Q  17 gtacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctc 116  Q
    ||||||||| || ||||||||||||||||||||  | ||| ||| ||||||||| |||| |||||| |||||       ||| |||||||| || ||| |    
T  11648110 gtacaaatcttagcttcaagtagaatcaattttaaatgcataataaattctactcgacagcaatcaaacatg-------tcaaaatcaattatacaccac 11648018  T
Q  117 caaaatcaattttggttcctctagaagtggaaccaaa 153  Q
    ||||||||||| |||| |||||||||||||| |||||    
T  11648017 caaaatcaattatggtccctctagaagtggagccaaa 11647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 38845644 - 38845701
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaacata 38845701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27374349 - 27374425
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 94  Q
    |||||||||||||||||||||||||||||| |  ||||||||| ||||||||| || ||||| || |||||| ||||    
T  27374349 tacaaatcctaacttcaagtagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcagaa 27374425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 36639952 - 36639912
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  36639952 cttcaagtagaatctattttggaggcaaaatcaattctact 36639912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 43268519 - 43268467
Alignment:
Q  17 gtacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctac 69  Q
    |||||||||  |||||||||||||| ||||| |||||||||||||||||||||    
T  43268519 gtacaaatctcaacttcaagtagaaccaattctggaggcaaaatcaattctac 43268467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 14299357 - 14299310
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaatt 65  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  14299357 tacaaatcctaacttcaagtagaatcaattttaaaagcaaaatcaatt 14299310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 18851211 - 18851272
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||| ||||||||| | ||||| ||||||||||||| |||||||||| |||| ||||||||    
T  18851211 tcagagtcaattctacaactccataatcaattttggtccctctagaagcggaatcaaacata 18851272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 22226365 - 22226426
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||||||| || ||||||||||||| | |||| |||| |||||||| ||||||||    
T  22226365 tcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaacata 22226426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 9818761 - 9818717
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatca 62  Q
    |||||||| || |||||||||||||||||| ||||||||||||||    
T  9818761 tacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 13171831 - 13171866
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaatt 65  Q
    ||||||||||||||||||||||||||| ||||||||    
T  13171831 cttcaagtagaatcaattttggaggcagaatcaatt 13171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 3043137 - 3043194
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| ||||| | ||||||||||| |||||| | ||||||||||| |||||    
T  3043137 aatcaattctacacctctagaatcaattttgattcctccataagtggaaccagacata 3043194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 5468786 - 5468729
Alignment:
Q  32 tcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgt 89  Q
    |||||||||||||| | |||||||| |||||||| || | ||||||||||| ||||||    
T  5468786 tcaagtagaatcaaatatggaggcagaatcaattataatcgacaacaatcaaacatgt 5468729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 6951363 - 6951392
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaatt 47  Q
    ||||||||||||||||||||||||||||||    
T  6951363 tacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 22572511 - 22572540
Alignment:
Q  33 caagtagaatcaattttggaggcaaaatca 62  Q
    ||||||||||||||||||||||||||||||    
T  22572511 caagtagaatcaattttggaggcaaaatca 22572540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 29922631 - 29922582
Alignment:
Q  40 aatcaattttggaggcaaaatcaattctactggacaacaatcagacatgt 89  Q
    |||||||| | |||||||||||||||||||| || |||||||| ||||||    
T  29922631 aatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgt 29922582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36290061 - 36290001
Alignment:
Q  19 acaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaa 79  Q
    ||||||| |||||||||||| |||||||| || | |||| || ||||||||| ||||||||    
T  36290061 acaaatcttaacttcaagtataatcaattatgaatgcaacattaattctactcgacaacaa 36290001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 42858133 - 42858085
Alignment:
Q  20 caaatcctaacttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    ||||||||||||||||||| |||||||| | ||| |||||| |||||||    
T  42858133 caaatcctaacttcaagtaaaatcaattctagagtcaaaatgaattcta 42858085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 28083946 - 28084078
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctcc 117  Q
    ||||||| ||| ||||||||||||||||||  | || |||||||||||||||| || ||||| || | ||||       |||||||||||||| ||  ||    
T  28083946 tacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatatgt-------cagaatcaattctacactacc 28084038  T
Q  118 aaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    | | |||||||||| |||||||||||||||| ||||||||    
T  28084039 agagtcaattttggctcctctagaagtggaatcaaacata 28084078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 6021831 - 6021779
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    |||| |||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  6021831 tacatatcctagcttcaagtagaatcgattctagaggcaaaatcaattctact 6021779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 50571311 - 50571264
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaatt 65  Q
    |||||||||||||||||||||||||||||| || ||  ||||||||||    
T  50571311 tacaaatcctaacttcaagtagaatcaattctgaagataaaatcaatt 50571264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 15478134 - 15478196
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacatatacaa 162  Q
    ||||||||||| ||| | |||||||| ||||| ||||| | ||||||||||||||||| ||||    
T  15478134 aatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatacacaa 15478196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 36780178 - 36780311
Alignment:
Q  21 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaattctagacctccaaa 120  Q
    ||||||||||||||||||||||  |||||| ||  ||||| ||| | ||| |||||||| || |||| |       || ||||||||||| ||||||| |    
T  36780178 aaatcctaacttcaagtagaattcattttgaagataaaattaatacaactcgacaacaaccaaacatat-------caaaatcaattctacacctccata 36780270  T
Q  121 atcaattttggttcctctagaagtggaaccaaacatataca 161  Q
    ||||||| |||| |||||| ||||  || ||||||||||||    
T  36780271 atcaattatggtccctctaaaagtaaaatcaaacatataca 36780311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 1514370 - 1514317
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactg 71  Q
    ||||||||||| ||||||||||||| |||||||||| || ||||| || |||||    
T  1514370 tacaaatcctagcttcaagtagaataaattttggagacagaatcagttttactg 1514317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 5268247 - 5268194
Alignment:
Q  17 gtacaaatcctaacttcaagt-agaatcaattttggaggcaaaatcaattctac 69  Q
    |||||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||    
T  5268247 gtacaaattctagcttcgagttagaatcaattttggaggcaaaattaattctac 5268194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 8130910 - 8130853
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| || |  | |||||||||||| ||||| |||||||||||||||||||    
T  8130910 aatcaattctacacttttagaatcaattttggctcctccagaagtggaaccaaacata 8130853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 45660878 - 45660938
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||||||  ||||||||| ||||||||||  |||| ||||||||||| |||||||    
T  45660878 tcagaatcaattcttcacctccaaa-tcaattttggcccctccagaagtggaacgaaacata 45660938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 47053438 - 47053385
Alignment:
Q  21 aaatcctaacttcaagtagaatcaat----tttggaggcaaaatcaattctact 70  Q
    ||||||||||||||| ||||||||||    | ||||||||||||||||||||||    
T  47053438 aaatcctaacttcaaatagaatcaatcaattctggaggcaaaatcaattctact 47053385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 48549082 - 48549110
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaa 58  Q
    |||||||||||||||||||||||||||||    
T  48549082 cttcaagtagaatcaattttggaggcaaa 48549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 15903588 - 15903635
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaatt 65  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15903588 tacaaatcccaacttcaagtataatcaattttggaggcaaaatcaatt 15903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 36271007 - 36270955
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||| ||||||||||||||| |||| | ||||||||||||||||||||    
T  36271007 tacaaatcccaacttcaagtagaataaattctagaggcaaaatcaattctact 36270955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 40422819 - 40422767
Alignment:
Q  19 acaaatcctaacttcaagt-agaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  40422819 acaaatcctaacttcaagttagaatcaattcttgaggcaaaatcaattctact 40422767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 5489918 - 5489956
Alignment:
Q  32 tcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5489918 tcaagtagaatcaattttggaggcaaaattaattctact 5489956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 46325627 - 46325570
Alignment:
Q  100 aatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    ||||||||||| || |||||||| || ||||||| ||||||||||| |||||||||||    
T  46325627 aatcaattctacacatccaaaattaaatttggtttctctagaagtgaaaccaaacata 46325570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 41386873 - 41386949
Alignment:
Q  18 tacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaa 94  Q
    ||||||||||| |||||||||||||||||| || |||  ||||||||| |||| || | |||||| |||||| ||||    
T  41386873 tacaaatcctagcttcaagtagaatcaattctgaaggtgaaatcaattatactcgaaagcaatcaaacatgtcagaa 41386949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 27571881 - 27571818
Alignment:
Q  26 ctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgt 89  Q
    |||||||||||||||||||||| | |||| |||||||||| |||| || | |||||| ||||||    
T  27571881 ctaacttcaagtagaatcaattcttgaggtaaaatcaattatactcgagagcaatcaaacatgt 27571818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 44856878 - 44856917
Alignment:
Q  31 ttcaagtagaatcaattttggaggcaaaatcaattctact 70  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  44856878 ttcaagtagtatcaattttggagggaaaatcaattctact 44856917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 45005035 - 45004997
Alignment:
Q  30 cttcaagtagaatcaattttggaggcaaaatcaattcta 68  Q
    |||||||||||||||||| || |||||||||||||||||    
T  45005035 cttcaagtagaatcaattctgaaggcaaaatcaattcta 45004997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 31544 - 31605
Alignment:
Q  96 tcagaatcaattctagacctccaaaatcaattttggttcctctagaagtggaaccaaacata 157  Q
    |||||||||||| || |  || ||||||||||||||| |||||||||||||||| |||||||    
T  31544 tcagaatcaattttacaggtctaaaatcaattttggtccctctagaagtggaactaaacata 31605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University