View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_low_4 (Length: 455)
Name: NF17197_low_4
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2592282 - 2592527
Alignment:
| Q |
1 |
aacacctaattcactttctccttttccttcttcactattatgagataagttattaattaattaagaagattttcttctgattaattatatatatctacct |
100 |
Q |
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| T |
2592282 |
aacacctaattcactttctccttttccttcttcactattatgagataagttattaattaattaagaagattttcttctgattaattatatatatctacct |
2592381 |
T |
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| Q |
101 |
aactaggaagagcttgttccttctcattttgattttccacacnnnnnnngattgctgattggaaagatttgagtgaaaatatactgtatatgtatatgta |
200 |
Q |
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| T |
2592382 |
aactaggaagagcttgttccttctcattttgattttccacactttttttgattgctgattggaaagatttgagtgaaaatataatgtatatgtatatgta |
2592481 |
T |
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| Q |
201 |
taacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
246 |
Q |
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| T |
2592482 |
taacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
2592527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 273 - 444
Target Start/End: Original strand, 2592554 - 2592726
Alignment:
| Q |
273 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtggtg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2592554 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtgctg |
2592653 |
T |
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| Q |
373 |
gttttttcttgaatgat-aataatgggtttaccttttcaacatttgtgtctcttttatacaagaaccacaggt |
444 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2592654 |
gttttttcttgaatgataaataatgggtttgccttttcaacatttgtgtctcttttatacaacaaccacaggt |
2592726 |
T |
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