View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_low_6 (Length: 396)
Name: NF17197_low_6
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 7414998 - 7414643
Alignment:
| Q |
16 |
atgtagacatgataatgaagaagtatatgatgttggattgttggaatttacatttagtaatgagtgtagtagtatatccctttgttaattctctctacta |
115 |
Q |
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| T |
7414998 |
atgtaggcatgataatgaagaaatatatgatgttggattgttggaatttacatttagtaatgagtgtagtagtatatccctttgttaattctctctacta |
7414899 |
T |
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| Q |
116 |
gttattgtagagttttgaaataccaaattaaattatgttagtatgttcttacttgctttttacgtttattaatctgtgtttgtttacacggtgagatacc |
215 |
Q |
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| T |
7414898 |
gttattgtagagttttgtaataccaaattaaattatgttagtatgttcttacttgctttttatgtttcttactctgtg--tgtttacacggtgggatacc |
7414801 |
T |
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| Q |
216 |
caccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcgagattttgaattgtaacgtccaacca |
315 |
Q |
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| T |
7414800 |
caccagtctgcattttaatcaattctataaatttaagcttctatcattttacgtttt------ctttgtacgtgagattttgaattgtaacgtccaacca |
7414707 |
T |
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| Q |
316 |
aaaacactattagacaattattgcaagttaaactggaatgaattttcttttacataattgttaa |
379 |
Q |
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| T |
7414706 |
aatatactattagacaattattgcaagttaaactggatcgaattttcttttacataattgttaa |
7414643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 33680403 - 33680268
Alignment:
| Q |
190 |
tgtgtttgtttacacggtgagatacccaccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcg |
289 |
Q |
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| T |
33680403 |
tgtgtttgtttacacggtgggatacccacaaacctgcgttttgaccaactctacaaatcttagcttccttatttttacgttttctttgccttgggacgcg |
33680304 |
T |
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| Q |
290 |
agattttgaattgtaacgtccaaccaaaaacactat |
325 |
Q |
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| T |
33680303 |
taattttgagttggaacgtgttaccaaacacactat |
33680268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 33396551 - 33396615
Alignment:
| Q |
259 |
tatttttacgttttctctgccttggaatgcgagattttgaattgtaacgtccaaccaaaaacact |
323 |
Q |
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| T |
33396551 |
tattttcatgttttctcagccttgggaggcaagattttgaattataacgtccaaccaaacacact |
33396615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 42477061 - 42476931
Alignment:
| Q |
193 |
gtttgtttacacggtgagatacccaccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcgaga |
292 |
Q |
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|||||||| ||| ||| ||||||||||||||||| |||||| ||| | ||||||| || |||| |||||| |||||||||| ||| | | ||||| |
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| T |
42477061 |
gtttgtttgcacagtgggatacccaccaacctgcgttttagccaactctacaaatccaaacttcgttattttcacgttttctcaatcttaggacacgaga |
42476962 |
T |
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| Q |
293 |
ttttgaattgtaacgtccaaccaaaaacact |
323 |
Q |
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| T |
42476961 |
ttttgaattgcatcgtcctaccaaacacact |
42476931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 41188989 - 41189101
Alignment:
| Q |
194 |
tttgtttacacggtgagatacccaccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcgagat |
293 |
Q |
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| T |
41188989 |
tttgtttacacggtgggatacccagcaaccttgcgtttggccaattctacaaatttgagcttcgttattttcacgttttatgagccttgggacacgagat |
41189088 |
T |
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| Q |
294 |
tttgaattgtaac |
306 |
Q |
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|||| || ||||| |
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| T |
41189089 |
tttgtatagtaac |
41189101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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