View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_low_7 (Length: 389)
Name: NF17197_low_7
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 1688893 - 1689234
Alignment:
| Q |
18 |
catgcctcacttataaaacataaaaaactatcaatatgcaaaatcctacttctctttcagccttaaagaacnnnnnnnnnnattattatgatattagtac |
117 |
Q |
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| T |
1688893 |
catgcctcacttataaaacataaaaaactatcaatatgcaaaatcctacttctgtttcagccttaaagaactttttttt--attattatgatattagtat |
1688990 |
T |
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| Q |
118 |
gaaatttctacggtcgtatattaatgactaattttcgtcgaagaacttataaaatatacaagttgaattatccttttctaccttcnnnnnnncttcgtat |
217 |
Q |
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| T |
1688991 |
gaaatttctacggtcgtatattaatgactaatttccgtc-----acctataaaatatacaagttgaattatccttttctaccttttttttttcttcatat |
1689085 |
T |
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| Q |
218 |
gtatgagccacaaaacgaaacactgaccatatacttaaggtttcgcttgtcacttggaccaatacacctttttatttggaccatatattttctactattg |
317 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1689086 |
gtatgaggcacaaaacgaaaccctgaccatatacttaaggtttcgcttatcacttggaccaatacacctttttatttggaccatatattttctattattg |
1689185 |
T |
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| Q |
318 |
agtctcaaagatatgcgtgtgcgatggtaaattcttatttcaatttagg |
366 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
1689186 |
agtctcaaagatatgcgtgtgtgatggtaaattcttattttaatttagg |
1689234 |
T |
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