View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17197_low_9 (Length: 304)
Name: NF17197_low_9
Description: NF17197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17197_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 52972022 - 52972290
Alignment:
| Q |
18 |
tataggacaccattatgttgatgatagtaataataataataagggtacatccacatccactgcagatattcaaaacgaagaaaacaatgataaaacaagg |
117 |
Q |
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| T |
52972022 |
tataggacaccattatgttgatgatagtaat---aataataagggtacatccacatccaccgcagatattcaaaacgaagaaaacaacgataaaacaagg |
52972118 |
T |
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| Q |
118 |
gatcaaaatttagatggggagcctaacaaatcaccttttgtagttcaattgatgacaattatggaccttttagatgaaaataccgaaaggaagtccaagt |
217 |
Q |
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| T |
52972119 |
gatcaaaatttagatggagagcctaacaaatcaccttttgtagttcaattgatgacaattatggaccttttagatgaaaataccgaaaggaagtccaagt |
52972218 |
T |
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| Q |
218 |
tatatagggatatggctttacgatgtgtttttctaatgaacaatgggagatacatagtgcaaaagattaaag |
289 |
Q |
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| T |
52972219 |
tatatagggatatggctttacgatgtgtttttctaatgaacaatgggagatacatagtgcaaaagattaaag |
52972290 |
T |
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