View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_high_12 (Length: 443)

Name: NF17198_high_12
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_high_12
NF17198_high_12
[»] chr5 (2 HSPs)
chr5 (5-362)||(30324124-30324496)
chr5 (256-310)||(38617397-38617451)
[»] chr8 (2 HSPs)
chr8 (5-361)||(12161981-12162355)
chr8 (5-361)||(12406409-12406783)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 362
Target Start/End: Complemental strand, 30324496 - 30324124
Alignment:
Q  5 tgtccaagaatatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac 104  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30324496 tgtccaataagatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac 30324397  T
Q  105 acccnnnnnnnnttaatagcaaaagcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaactttgt 204  Q
    ||||        ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30324396 acccaaaaaaaattaatagcaaaagcattcaatattttgttgtccgattggaaatatacaactctacaacgtatgcattcattaagatatacaactttgt 30324297  T
Q  205 atgtatacatatacaaatatttctgagatattatacaacttattagttctgtaaa---------------atatttgcggtgcccctaaaaagaatattc 289  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||               ||||||||||||||||||||||||||||||    
T  30324296 atgtatacatatacaaatatttatgagatgttatacaacttattagttctgtaaaatatacaactctaaaatatttgcggtgcccctaaaaagaatattc 30324197  T
Q  290 tttatagtgttgaacttcaatccttgtattgtagtctcgtgcttctattttttgaatgaatttaaataactgg 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30324196 tttatagtgttgaacttcaatccttgtattgtagtctcgtgcttctattttttgaatgaatttaaataactgg 30324124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 38617397 - 38617451
Alignment:
Q  256 taaaatatttgcggtgcccctaaaaagaatattctttatagtgttgaacttcaat 310  Q
    ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  38617397 taaaatatttgtggtgcccctaaaaagaatactatttatagtgttgaacttcaat 38617451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 12161981 - 12162355
Alignment:
Q  5 tgtccaagaatatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac 104  Q
    ||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12161981 tgtccaataagatccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaac 12162080  T
Q  105 acccnnnnnnnn-ttaatagcaaaagcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaactttg 203  Q
    |||          ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12162081 acctaaaaaaaaattaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcg 12162180  T
Q  204 tatg------tatacatatacaaatatttctgagatattatacaacttattagttctg---------------taaaatatttgcggtgcccctaaaaag 282  Q
    ||||      |||||||||||||||||||||||||| |||||||||||||||||||||               |||||||||||||||||||||||||||    
T  12162181 tatgcatacatatacatatacaaatatttctgagatgttatacaacttattagttctgtaaaatatacaactctaaaatatttgcggtgcccctaaaaag 12162280  T
Q  283 aatattctttatagtgttgaacttcaatccttgtattgtagtctcgtgcttcta-ttttttgaatgaatttaaataactg 361  Q
    ||||||||||||||||||||||||||||||     ||||||| ||||||||||| |||||||||||||||||||||||||    
T  12162281 aatattctttatagtgttgaacttcaatcc-----ttgtagtgtcgtgcttctatttttttgaatgaatttaaataactg 12162355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 12406409 - 12406783
Alignment:
Q  5 tgtccaagaatatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac 104  Q
    ||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12406409 tgtccaataagatccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaac 12406508  T
Q  105 acccnnnnnnnn-ttaatagcaaaagcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaactttg 203  Q
    |||          ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12406509 acctaaaaaaaaattaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcg 12406608  T
Q  204 tatg------tatacatatacaaatatttctgagatattatacaacttattagttctg---------------taaaatatttgcggtgcccctaaaaag 282  Q
    ||||      |||||||||||||||||||||||||| |||||||||||||||||||||               |||||||||||||||||||||||||||    
T  12406609 tatgcatacatatacatatacaaatatttctgagatgttatacaacttattagttctgtaaaatatacaactctaaaatatttgcggtgcccctaaaaag 12406708  T
Q  283 aatattctttatagtgttgaacttcaatccttgtattgtagtctcgtgcttcta-ttttttgaatgaatttaaataactg 361  Q
    ||||||||||||||||||||||||||||||     ||||||| ||||||||||| |||||||||||||||||||||||||    
T  12406709 aatattctttatagtgttgaacttcaatcc-----ttgtagtgtcgtgcttctatttttttgaatgaatttaaataactg 12406783  T

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