View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_high_20 (Length: 390)
Name: NF17198_high_20
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 52721193 - 52720820
Alignment:
| Q |
1 |
caacatcaaacaacctgtaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccgtttaatttgttaaactatta |
100 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52721193 |
caacatcaaacaacccgtaaaaattccataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccatttaatttgttaaactatta |
52721094 |
T |
|
| Q |
101 |
catgctcatgtgttggtctcactcctgtccaatgtgtgcttctgtgtactgtgttgatgttttataggagagatatgactaatcactatatataaaaggt |
200 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52721093 |
catgcttatgtgttggtctcactcgtgtccaatgtgtgcttctgtgtactgtgttggtgttttataggagagatatgactaatcactgtatataaaaggt |
52720994 |
T |
|
| Q |
201 |
ttgaagggttggtgtatagattgagtattagaaatgagcacttgttgaaatacagtactaaaaattatatttttgttgctatttgatactcattatagtt |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
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| T |
52720993 |
ttgaagggttggtgtatagattgagtattagaagtgaacacttgttgaaatacagtactagagattctatttttgttgctatttgatactcattatagtt |
52720894 |
T |
|
| Q |
301 |
aattttcacaagagcatttgctagctaacacaaccattaccaatttgcttctaagttggttagaaacatagtag |
374 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52720893 |
aattttcacatgagcatttgctagctaacacaaccattaccaatttgcttctaagttggttagaaacacagtag |
52720820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 10382634 - 10382296
Alignment:
| Q |
1 |
caacatcaaacaacctgtaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccgt------------------- |
81 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |
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| T |
10382634 |
caacatcaaacaacctttaaaaattccataagctgtaaaaattgatattatacttcttgattaaaaaatgaagagacccatatggtggtgattacattta |
10382535 |
T |
|
| Q |
82 |
--ttaatttgttaaactattacatgctcatgtgttggtctcactcctgtccaatgtgtgcttctgtgtactgtgttgatgttttataggagagatatgac |
179 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
10382534 |
atttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttttgtgtactgtgttggtgttttataggagagatatgac |
10382435 |
T |
|
| Q |
180 |
taatcactatatataaaaggtttgaagggttggtgtatagattgagtattagaaatgagcacttgttgaaatacagtactaaaaattatatttttgttgc |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |||||||||||| |
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| T |
10382434 |
taatcactgtatataaaaggtttgaagggttggtatatagattgagtattagaagtgaacacttgttgaaatacagtactagatattctatttttgttgc |
10382335 |
T |
|
| Q |
280 |
tatttgatactcattatagttaattttcacaagagcatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10382334 |
tatttgatactcattatagttaattttcacaagagcatt |
10382296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 9484428 - 9484764
Alignment:
| Q |
1 |
caacatcaaacaacctgtaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccgt------------------- |
81 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9484428 |
caacatcaaacaacatgtaaaaattctataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccatctggtggtgattacattta |
9484527 |
T |
|
| Q |
82 |
--ttaatttgttaaactattacatgctcatgtgttggtctcactcctgtccaatgtgtgcttctgtgtactgtgttgatgttttataggagagatatgac |
179 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
9484528 |
atttaatttgttaaactattacatgcttatga--tggtctcactcatgtccaatgtgtacttcagtgtactgtgttggtgttttataggagagatatgac |
9484625 |
T |
|
| Q |
180 |
taatcactatatataaaaggtttgaagggttggtgtatagattgagtattagaaatgagcacttgttgaaatacagtactaaaaattatatttttgttgc |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| | ||| |||||||||||| |
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|
| T |
9484626 |
taatcactgtatataaaaggtttgaagggttggtatataaattgagtattagaagtgaacacttgttgaaatacagtactagatattctatttttgttgc |
9484725 |
T |
|
| Q |
280 |
tatttgatactcattatagttaattttcacaagagcatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
9484726 |
tatttgatactcattatagttaattttcacaagagcatt |
9484764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 9484761 - 9484794
Alignment:
| Q |
335 |
cattaccaatttgcttctaagttggttagaaaca |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
9484761 |
cattaccaatttgcttctaagttggttagaaaca |
9484794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 10382299 - 10382266
Alignment:
| Q |
335 |
cattaccaatttgcttctaagttggttagaaaca |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
10382299 |
cattaccaatttgcttctaagttggttagaaaca |
10382266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 46993711 - 46993762
Alignment:
| Q |
28 |
ataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagaccc |
79 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
46993711 |
ataagctgtaaaaattgatcttatccttcttgattaaaaaatcaagtgaccc |
46993762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 10117336 - 10117384
Alignment:
| Q |
272 |
tttgttgctatttgatactcattatagttaattttcacaagagcatttg |
320 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||| |||||| |||| |
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|
| T |
10117336 |
tttgttgttatttgatactcattatagtgaattttcataagagcttttg |
10117384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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